PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013657_P04
Common NameEREB171, LOC100279334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 412aa    MW: 45298.2 Da    PI: 8.9964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013657_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.2e-1774133155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  GRMZM2G013657_P04  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 133
                        57*******************766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1774143IPR016177DNA-binding domain
CDDcd000188.49E-1174143No hitNo description
PfamPF008471.4E-1274133IPR001471AP2/ERF domain
PROSITE profilePS5103219.83675141IPR001471AP2/ERF domain
SMARTSM003806.2E-2575147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1575142IPR001471AP2/ERF domain
PRINTSPR003674.2E-57687IPR001471AP2/ERF domain
PRINTSPR003674.2E-5123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASPNPEAAG LQAVAVAGAG EGGSSSSLSA VAGAAALSGE LVPRRALALR KERVCTAKER  60
ISRMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA  120
ARAYDLAALK YWGAGTQINF PVSDYARDLE EMQMISKEDY LVSLRRKSSA FYRGLPKYRG  180
LLRQLHNSRW DTSLGLGNDY MSLSCGKDIM LDGKFAGSFG LERKIDLTNY IRWWLPKKTR  240
QSDTSKTEEI ADEIRAIESS MQQTEPYKLP SLGFSSPSKP SSMGLSACSI LSQSDAFKSF  300
LEKSTKLSEE CSLSKEIVEG KTVASVPATG YDTGAININM NELLVQRSTY SMAPVMPTPM  360
KSTWSPADPS VDPLFWSNFV LPSSQPVTMA TITTTTFAKN EVSSSDPFQS QE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.832100.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013657
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013657_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145827.10.0uncharacterized LOC100279334
RefseqXP_008647714.20.0putative AP2/EREBP transcription factor superfamily protein isoform X1
RefseqXP_020394491.10.0putative AP2/EREBP transcription factor superfamily protein isoform X1
SwissprotQ8GWK21e-102AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLB4FT200.0B4FT20_MAIZE; AP2 domain transcription factor
STRINGGRMZM2G013657_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-94AP2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]