PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013657_P02
Common NameLOC100279334
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 409aa    MW: 44922.7 Da    PI: 9.0091
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013657_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.3e-1374130155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  GRMZM2G013657_P02  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 130
                        57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1474140IPR016177DNA-binding domain
PfamPF008471.4E-874130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1275139IPR001471AP2/ERF domain
PROSITE profilePS5103218.22875138IPR001471AP2/ERF domain
SMARTSM003802.2E-1875144IPR001471AP2/ERF domain
PRINTSPR003674.2E-57687IPR001471AP2/ERF domain
PRINTSPR003674.2E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASPNPEAAG LQAVAVAGAG EGGSSSSLSA VAGAAALSGE LVPRRALALR KERVCTAKER  60
ISRMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGA YDDEEAAARA  120
YDLAALKYWG AGTQINFPVS DYARDLEEMQ MISKEDYLVS LRRKSSAFYR GLPKYRGLLR  180
QLHNSRWDTS LGLGNDYMSL SCGKDIMLDG KFAGSFGLER KIDLTNYIRW WLPKKTRQSD  240
TSKTEEIADE IRAIESSMQQ TEPYKLPSLG FSSPSKPSSM GLSACSILSQ SDAFKSFLEK  300
STKLSEECSL SKEIVEGKTV ASVPATGYDT GAININMNEL LVQRSTYSMA PVMPTPMKST  360
WSPADPSVDP LFWSNFVLPS SQPVTMATIT TTTFAKNEVS SSDPFQSQE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.832100.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013657
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013657_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145827.10.0uncharacterized LOC100279334
RefseqXP_008647714.20.0putative AP2/EREBP transcription factor superfamily protein isoform X1
RefseqXP_020394491.10.0putative AP2/EREBP transcription factor superfamily protein isoform X1
SwissprotQ8GWK29e-98AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3L6EC510.0A0A3L6EC51_MAIZE; AP2-like ethylene-responsive transcription factor
STRINGGRMZM2G013657_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-89AP2 family protein