PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013398_P03
Common NameCOL6, ZEAMMB73_488664, Zm.5652
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 407aa    MW: 43699.7 Da    PI: 5.1539
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013398_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06445540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+ ++e++   +C+++   lC +C  + H+       Ht++
  GRMZM2G013398_P03  4 LCDFCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                       6*****************************657888889876 PP
2zf-B_box22.52.4e-074789541
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        C+++ ++++   C   +  lC++C  ++H        H++++
  GRMZM2G013398_P03 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgsssagHKRQT 89
                       7*****************************3256677788765 PP
3CCT62.91e-21350393144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+ al+RYkeK+ +RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  GRMZM2G013398_P03 350 RDSALTRYKEKKMRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                        899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
CDDcd000214.74E-8447No hitNo description
PROSITE profilePS501199.0444390IPR000315B-box-type zinc finger
CDDcd000211.18E-54790No hitNo description
SMARTSM003360.224890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.15350392IPR010402CCT domain
PfamPF062039.7E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGALCDFCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LAENASLCQN CDWNGHIAGS SSAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDSILLDI ASATLVSDIG TCDKLLVGSS SGAGVNLLPL  180
ATGQTETAGS VDSTPDKVPY TPDKDMFSKD SIYEDFCVDD ADLAFENYEE LFGTSHIQTE  240
QLFDDAGIDI YFEMKEAPAG NSTESKLKQP ANSNAVSADS GMSNPGVKGD SSVCTPLRQA  300
RSSLSLSFAG LTGESSAGDH QDCVVSSLLL MGEPPWQPPG PEGSIAGGSR DSALTRYKEK  360
KMRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LCQTRSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.56520.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013398
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013398_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278500.0KJ727850.1 Zea mays clone pUT5895 C2C2-CO-like transcription factor (COL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399253.10.0uncharacterized protein LOC100282916 isoform X4
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK7VTP20.0K7VTP2_MAIZE; C2C2-CO-like transcription factor
STRINGGRMZM2G013398_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-93B-box type zinc finger protein with CCT domain