PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G013391_P01
Common NameLOC100502167, WRKY111, ZEAMMB73_215702
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 277aa    MW: 30023 Da    PI: 4.6027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G013391_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-3081139259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp v+ +tY+ +Hnhe
  GRMZM2G013391_P01  81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPAVLLVTYTFDHNHE 139
                        69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-3175141IPR003657WRKY domain
SuperFamilySSF1182901.31E-2578141IPR003657WRKY domain
SMARTSM007742.0E-3680140IPR003657WRKY domain
PROSITE profilePS5081131.97381141IPR003657WRKY domain
PfamPF031069.0E-2682139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSGEDGYCS SDSPRAESPD QPQAAAAADA DADAESPRAG AGPNKRDLHA SSPAAKRSRR  60
SVEKRVVSVP LAECGEGPPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRADPAVLLV TYTFDHNHEA PRPKSSCCHQ QGRPPAPKPD EPVAEQEDEL GPEHEPEDEQ  180
EPEQKVVPGL AGPETAPATA TLAPVAEEDE SFDLGWFDQY PTWHRSALYA PLLPPEEWER  240
ELQGEDALFA GLGELPECAV VFGRRRELSL AATAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-2064143679Disease resistance protein RRS1
5w3x_D6e-2064143679Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G013391
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G013391_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872590.0BT087259.1 Zea mays full-length cDNA clone ZM_BFb0020P09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183574.10.0uncharacterized protein LOC100502167
TrEMBLC4J8W20.0C4J8W2_MAIZE; Putative WRKY transcription factor 69
STRINGGRMZM2G013391_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-35WRKY DNA-binding protein 65