PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G012724_P01
Common NameLOC100281558
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 489aa    MW: 51502.7 Da    PI: 8.0942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G012724_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33204262260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++v++i+Y+g Hnh+k
  GRMZM2G012724_P01 204 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRVTQIVYKGAHNHPK 262
                        8********************************************************85 PP
2WRKY103.71e-32365423159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d ++v++tYeg+Hnh+
  GRMZM2G012724_P01 365 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDARAVITTYEGKHNHD 423
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28202263IPR003657WRKY domain
SuperFamilySSF1182901.7E-25203263IPR003657WRKY domain
PROSITE profilePS5081126.463203263IPR003657WRKY domain
SMARTSM007741.3E-35203262IPR003657WRKY domain
PfamPF031061.5E-24204261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-36350425IPR003657WRKY domain
SuperFamilySSF1182907.72E-29357425IPR003657WRKY domain
PROSITE profilePS5081137.929360425IPR003657WRKY domain
SMARTSM007749.5E-38365424IPR003657WRKY domain
PfamPF031062.3E-25366423IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASSTGSLEH GGFTFTPPPF ITSFTELLSG AAADMVGAAG ADHQERSPRG LFHRGATRGG  60
GVGVPKFKSA QPPSLPISPP PMSPSSYFSI PPGLSPAELL DSPVLLHSSS NFFASPTTGA  120
IPAQRFDWKH AADLIASQSQ QDDSRAAVGS AFNDFSFHAP TMPAQTTSFP SFKEQQQQQV  180
EAATKSAVPS SNKASGGGGG TKLEDGYNWR KYGQKQVKGS ENPRSYYKCT YHSCSMKKKV  240
ERSLADGRVT QIVYKGAHNH PKPLSTRRNS SGGVAAAEEQ AANNSSLSGC GGPEHSGGAT  300
AENSSVTFGD DEAENGSQRS GGDEPDAKRW KAEDGENEGS SGAGGGKPVR EPRLVVQTLS  360
DIDILDDGFR WRKYGQKVVK GNPNPRSYYK CTTAGCPVRK HVERACHDAR AVITTYEGKH  420
NHDVPVGRGA ASRAAAAAPL LGSGGGQMDH RHQQPYTLEM LSGGGGGYGG GYAAKDEPRD  480
DLFVDSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35203425177Probable WRKY transcription factor 4
2lex_A3e-35203425177Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.972730.0endosperm| leaf| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G012724
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G012724_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570970.0EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354955.10.0uncharacterized protein LOC100281558
SwissprotQ6B6R41e-115WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-115WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1D6M2S40.0A0A1D6M2S4_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G012724_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.13e-90WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]