PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G012717_P01 | ||||||||
Common Name | COL10, Zm.35863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 452aa MW: 48379.9 Da PI: 5.071 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.3 | 6.7e-08 | 21 | 62 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ GRMZM2G012717_P01 21 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 62 578*****************************6567777776 PP | |||||||
2 | CCT | 67.7 | 3.1e-23 | 397 | 440 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a GRMZM2G012717_P01 397 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 440 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.2E-11 | 19 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 19 | 66 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 22 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.59E-8 | 24 | 66 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 397 | 439 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.7E-18 | 397 | 439 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 452 aa Download sequence Send to blast |
MIATTRGSSA KAAAAVGGKA ARACDGCLRR RARWYCAADD AFLCQGCDTS VHSANPLARR 60 HERLRLCPAS PLQTPPDRSA AAAATATNKR ERHDEVAVPA WFGRKARTPR GGHAKSVGQV 120 ALSRRLVVPH AAGGDSDSPD ERNGGEEEQL LYRVPILDPA LAEFCSPPPL EDAAGLALDA 180 SVCNEDGAIE DPAKPDPAAP LAQFCPVSGH FNFGPTDAEL REFAADMEAL LGHGLDDGNE 240 EDSSFYMETL GLLDPMEVGD DATQVKVETD GSSACCEASG TLACGLELDL EASDEMLDID 300 FDYASPQDTA TDERAASSDT GADAQFLQTS LSLTLNYEAI IQSWGSSPWT GGGERPHVKL 360 DTRWPHDYTN MWVVGGVVGH GGEDLPGTPR LGMDGGREAR VSRYREKRRT RLFSKKIRYE 420 VRKLNAEKRP RMKGRFVKRA TAGGSLAIAG LA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 407 | 423 | RRTRLFSKKIRYEVRKL |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G012717 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G012717_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063806 | 0.0 | BT063806.1 Zea mays full-length cDNA clone ZM_BFc0109I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140584.1 | 0.0 | uncharacterized protein LOC100272654 | ||||
TrEMBL | C0P687 | 0.0 | C0P687_MAIZE; C2C2-CO-like transcription factor | ||||
STRING | GRMZM2G012717_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3283 | 30 | 58 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 9e-73 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G012717_P01 |
Entrez Gene | 100272654 |