PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G012262_P02
Common Namepco123181a, ZEAMMB73_984648
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Whirly
Protein Properties Length: 274aa    MW: 29619.7 Da    PI: 10.3152
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G012262_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.97.2e-58962322138
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+sneG+v+k+
  GRMZM2G012262_P02  96 VFKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGTVKKS 187
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                        l++ Pl   sG+fvn++v ns  ++n+++svP++kaefav+r+ l
  GRMZM2G012262_P02 188 LSITPLGSDSGYFVNITVVNSAERTNDRLSVPITKAEFAVIRTTL 232
                        ******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.5E-7283251IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-6987274IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.9E-5796230IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MIAHFLGFGA SVGRNSLAPS PPPVRGARSV HLGRGDLRGD ETMLRLSRFL PSACRRGFDL  60
KESLWSGSLT FQQAVSTAAT NLDGNLSGKK FASYTVFKGK AALSIHPILP SFSKLESGGS  120
RVSKNGSVML TFFPAVGQRK YDYTKKQLFA LSPTEVGSLI SLGPAESCEF FHDPSMKSSN  180
EGTVKKSLSI TPLGSDSGYF VNITVVNSAE RTNDRLSVPI TKAEFAVIRT TLSFALPHIM  240
GWDQALTNHH PAPAPPASSR PTVERPHPDS EWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-72872498169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-72872498169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-72872498169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-72872498169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847320.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G012262
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G012262_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9762720.0EU976272.1 Zea mays clone 695581 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152589.21e-170uncharacterized protein LOC100286229
SwissprotD9J0345e-75WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3L6F8840.0A0A3L6F884_MAIZE; Single-stranded DNA-bindig protein WHY2, mitochondrial
TrEMBLK7UBM60.0K7UBM6_MAIZE; DNA binding protein isoform 1
STRINGGRMZM2G012262_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-74WHIRLY 2