PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011947_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 304aa    MW: 32193.3 Da    PI: 6.1322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011947_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.64.1e-104413010107
               GRAS  10 eavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                        +  ++gd+  a+++Larl+ +   +  +g+p+ R a+yf+eAL+  l+     + +al+p +           ++ +fsevsP+l+f+h t 
  GRMZM2G011947_P01  44 QLAEAGDAFGAREILARLNYRlpaVPMAGTPLLRSAFYFKEALRVALSP----TGEALAPPR----------GVDVAFSEVSPMLQFAHPTG 121
                        345669999**********9999556677******************99....444443332..........23447*************** PP

               GRAS  99 NqaIleave 107
                         qa+l+ ++
  GRMZM2G011947_P01 122 VQAVLDKLD 130
                        *****9875 PP
2GRAS90.92.1e-28128303171374
               GRAS 171 elgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                        +l+v ++f +    + ++l++ eL ++ + +a+aV+l +   ++         + + vL+lvk+l +kvvv+v++ +d+++ +F++++l+a+
  GRMZM2G011947_P01 128 KLDVFLQFAAY---NEDALDPAELvAITSSDAVAVHLPVGSAHVA--------AMPVVLRLVKRLGAKVVVFVDRGCDRTELPFATHLLQAF 208
                        78999999994...557788888735666**********999998........4566*********************************** PP

               GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                        + +++l+ds++a  ++++e+  k+Er+                  +++     Wr +l +aGF pv+ s++a++q+++ll++++  ++ ve+
  GRMZM2G011947_P01 209 QSCVSLLDSVDAVGGANAEAVGKIERF------------------MDKPPPLPWRTMLVSAGFVPVQASTFAESQVEALLKRIALMEFCVEK 282
                        **********99977777888888887..................33456789*******************************666***** PP

               GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                        + g l+++W++ +Lv+vSaW+
  GRMZM2G011947_P01 283 RGGMLCFYWQRGELVFVSAWQ 303
                        ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.1E-26128303IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAGAPAPKLS SFPGPVAQVG GGFASALKPN AKAGNNEAAA AVDQLAEAGD AFGAREILAR  60
LNYRLPAVPM AGTPLLRSAF YFKEALRVAL SPTGEALAPP RGVDVAFSEV SPMLQFAHPT  120
GVQAVLDKLD VFLQFAAYNE DALDPAELVA ITSSDAVAVH LPVGSAHVAA MPVVLRLVKR  180
LGAKVVVFVD RGCDRTELPF ATHLLQAFQS CVSLLDSVDA VGGANAEAVG KIERFMDKPP  240
PLPWRTMLVS AGFVPVQAST FAESQVEALL KRIALMEFCV EKRGGMLCFY WQRGELVFVS  300
AWQC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.116821e-140ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011947
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011947_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425221e-137BT042522.1 Zea mays full-length cDNA clone ZM_BFb0316K19 mRNA, complete cds.
GenBankKJ7277571e-137KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142045.21e-134uncharacterized protein LOC100274201
TrEMBLA0A1D6LJ670.0A0A1D6LJ67_MAIZE; Scarecrow-like protein 6
STRINGGRMZM2G011947_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-36GRAS family protein