PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G011932_P02 | ||||||||
Common Name | LOC100191525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 281aa MW: 30060.7 Da PI: 9.0444 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.5 | 8.9e-11 | 244 | 268 | 1 | 25 |
XXXXCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKk 25 e+elkre+rkq+NRe+ArrsR+RK+ GRMZM2G011932_P02 244 ERELKREKRKQSNRESARRSRLRKQ 268 89**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.9E-28 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 5.3E-8 | 239 | 268 | No hit | No description |
Pfam | PF00170 | 1.5E-8 | 244 | 270 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.24E-11 | 249 | 268 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 251 | 266 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAQDEAVATQ KTGNTTSPSK DYPTPSPYPD WSTMQAYYGP GVLPPTYFTP AIAPGHPPPY 60 MWGPQPIMPP PFGTPYAAVY PHGGAYPHPL VPMMSTPMSV EPAKSTNSKE KNSNKKLKEI 120 DRTAVSAGSG NSKRTVSSIE DYSAEGSSDV NDQNVNETSR KRSSDGGPGA ETTTGGNTEC 180 VLAPNHTLGN ATILPQHCFS APVIKPSATN VANSRAIGTA LSPPPGVMVP VHNAVPSDLS 240 VKDERELKRE KRKQSNRESA RRSRLRKQVC CVIQLYNEAA S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 266 | RRSRLRK |
2 | 260 | 267 | RRSRLRKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G011932 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G011932_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033625 | 0.0 | BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds. | |||
GenBank | BT062784 | 0.0 | BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds. | |||
GenBank | JX469957 | 0.0 | JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130428.1 | 0.0 | G-box binding factor 1 | ||||
Refseq | XP_008648295.1 | 0.0 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_008648296.1 | 0.0 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_023156092.1 | 0.0 | G-box binding factor 1 isoform X1 | ||||
TrEMBL | B4F937 | 0.0 | B4F937_MAIZE; G-box binding factor | ||||
TrEMBL | K4JBT9 | 0.0 | K4JBT9_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G011932_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-30 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G011932_P02 |