PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011932_P01
Common NameLOC100191525
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 377aa    MW: 40122.7 Da    PI: 7.7217
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011932_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.84.3e-22244306163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L aeN++L++e+ +l++ ++kl+ e+
  GRMZM2G011932_P01 244 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLAAENTSLRSEIGQLTESSEKLRLEN 306
                        89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.3E-28192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1706.2E-18239303No hitNo description
PfamPF001707.9E-21244306IPR004827Basic-leucine zipper domain
SMARTSM003382.1E-22244308IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.231246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-11247302No hitNo description
CDDcd147022.98E-22249297No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAQDEAVATQ KTGNTTSPSK DYPTPSPYPD WSTMQAYYGP GVLPPTYFTP AIAPGHPPPY  60
MWGPQPIMPP PFGTPYAAVY PHGGAYPHPL VPMMSTPMSV EPAKSTNSKE KNSNKKLKEI  120
DRTAVSAGSG NSKRTVSSIE DYSAEGSSDV NDQNVNETSR KRSSDGGPGA ETTTGGNTEC  180
VLAPNHTLGN ATILPQHCFS APVIKPSATN VANSRAIGTA LSPPPGVMVP VHNAVPSDLS  240
VKDERELKRE KRKQSNRESA RRSRLRKQAE TEELATQVES LAAENTSLRS EIGQLTESSE  300
KLRLENSALM VKLKDTAEPS PIKASASPSS PRASAENFLS MIDSANAPSV SRHTEHGGPR  360
LRQLLDSSPA TDVAAVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011932
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011932_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336250.0BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds.
GenBankBT0627840.0BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130428.10.0G-box binding factor 1
RefseqXP_008648295.10.0G-box binding factor 1 isoform X1
RefseqXP_008648296.10.0G-box binding factor 1 isoform X1
RefseqXP_023156092.10.0G-box binding factor 1 isoform X1
TrEMBLB4F9370.0B4F937_MAIZE; G-box binding factor
TrEMBLK4JBT90.0K4JBT9_MAIZE; BZIP-type transcription factor (Fragment)
STRINGGRMZM2G011932_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-50G-box binding factor 3
Publications ? help Back to Top
  1. Li C, et al.
    Genome-wide characterization of cis-acting DNA targets reveals the transcriptional regulatory framework of opaque2 in maize.
    Plant Cell, 2015. 27(3): p. 532-45
    [PMID:25691733]
  2. de Vetten NC,Ferl RJ
    Characterization of a maize G-box binding factor that is induced by hypoxia.
    Plant J., 1995. 7(4): p. 589-601
    [PMID:7742856]