PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G011832_P01 | ||||||||
Common Name | DOF32, LOC103643630, Zm.130972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 360aa MW: 36276.4 Da PI: 7.9739 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.1e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPryfCk+CrryWtkGGalrnvPvGgg+rknk+s+ GRMZM2G011832_P01 37 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 97 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.1E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 41 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.432 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MASTTGDDAV GTRKGGTGAG GTPPPTTQTQ TQPPPPPEQG LRCPRCDSPN TKFCYYNNYS 60 LSQPRYFCKT CRRYWTKGGA LRNVPVGGGC RKNKRSRSAA AVAAAAAAAA AASSSRLSLN 120 LPPEAAAAAD QQAARLGFLG AHHPVASSTI DGGGPAAADY HHQQAGAAAV GMIALPRLHA 180 PGVVGQYVPF GEWHPGTAGD VVTGGAAVSS SSSSIASSIE SLSFINQDLH WKLQQQRLAT 240 MFLGAPTSAA AAAAAHADSA AHVGGAFMQM SVAESTMTMP PPPLATSWFM DSSCYALPSP 300 TMTAHASTAA AVAAATGTCN VVNGAGAGDD DSAASNNNNN CGPGSAIQSW GDMSAFAMLP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G011832 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G011832_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726977 | 0.0 | KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665016.1 | 0.0 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A060D4H1 | 0.0 | A0A060D4H1_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
TrEMBL | A0A317Y610 | 0.0 | A0A317Y610_MAIZE; Dof zinc finger protein DOF5.3 | ||||
STRING | GRMZM2G011832_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 8e-33 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G011832_P01 |
Entrez Gene | 103643630 |