PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011598_P01
Common NameNAC44, Zm.16665
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 373aa    MW: 40588.6 Da    PI: 8.6697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011598_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.6e-5491371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  GRMZM2G011598_P01   9 LPPGFRFHPTDEELILHYLRNRAANAPCPV-AIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 99 
                        79****************************.88***************888889************************************** PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+   ge vg+kk Lvfy+gr pkg+kt+W+mheyrl
  GRMZM2G011598_P01 100 HSSttAGESVGVKKALVFYEGRPPKGTKTNWIMHEYRL 137
                        *99888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-653170IPR003441NAC domain
PROSITE profilePS5100562.5199170IPR003441NAC domain
PfamPF023651.5E-2710137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVMANPDMLP PGFRFHPTDE ELILHYLRNR AANAPCPVAI IADVDIYKFD PWDLPSRAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSTTAGESVG VKKALVFYEG  120
RPPKGTKTNW IMHEYRLAAD AQAAHAYRPM KFRNASMRLD DWVLCRIYKK ASCQVPAMAA  180
VPQLSDHDQD EHCGFDDNPY AAMLLQGASY SYPAPPHAAA GAQRMPRIPS LTELFNDPSL  240
AHFFEEGGGM QDMARLSNPQ QQQQHAPLLG RAVTSQQLLL NNGHSMPGGG QAQMDPHPPA  300
AAASTSSAAA GNNKRKRSST TTDAGALSSS QASEAKKPNG SCFGATFQIG NGLQGSSLGH  360
HHMPLHSNMG TMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-74917220170NAC domain-containing protein 19
3swm_B4e-74917220170NAC domain-containing protein 19
3swm_C4e-74917220170NAC domain-containing protein 19
3swm_D4e-74917220170NAC domain-containing protein 19
3swp_A4e-74917220170NAC domain-containing protein 19
3swp_B4e-74917220170NAC domain-containing protein 19
3swp_C4e-74917220170NAC domain-containing protein 19
3swp_D4e-74917220170NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011598
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011598_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655238.10.0NAC transcription factor NAM-2
TrEMBLA0A060D2H90.0A0A060D2H9_MAIZE; NAC domain containing protein 47 (Fragment)
STRINGGRMZM2G011598_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-84NAC domain containing protein 47