PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011588_P03
Common NameLOC100281572, Zm.7696
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 651aa    MW: 71815.7 Da    PI: 5.9727
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011588_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-084024391954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  GRMZM2G011588_P03 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439
                        664559******************************88 PP
2BELL121.43.9e-39265336172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+qelq+k akL+++l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  GRMZM2G011588_P03 265 EKQELQNKMAKLMTMLDEVDRKYKHYYHQMQLVMSSFNMVAGAGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                        689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-57189334IPR006563POX domain
PfamPF075267.4E-50195332IPR006563POX domain
PROSITE profilePS5007112.001380443IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27382452IPR009057Homeodomain-like
SMARTSM003894.8E-9383447IPR001356Homeobox domain
CDDcd000861.41E-12383444No hitNo description
SuperFamilySSF466891.03E-16384449IPR009057Homeodomain-like
PfamPF059202.9E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYSA ESGNVSYPVP SALGNFLYTN NASSGPYTEF SGIVQPQQNF  60
MELTGHPSAM SHDSSSNEAT NMGSSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN  120
DAHSTVQLEF GMLNNHNSTS VPLAPGQGLS LSLNTHILAP SYPHWSAKQD LLTPNSYQGD  180
DNRMKNMQSE ASQAIRNSKY LKAAQELLDE IVSVWKCVKQ KTDKGPAEAG KADGKETDGG  240
IKSEGVSSNP QESGANAAAE LSTAEKQELQ NKMAKLMTML DEVDRKYKHY YHQMQLVMSS  300
FNMVAGAGAA KPYTAVALQT ISRHFRCLKD AINDQISVIR KKLGEDDNTS GKEGKLTRLR  360
YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNGQRN KDKAPSPEEN  480
EDLQTPTSQA CQTSQLGQSK AIVGGVMGFS GVLAGGFHTE ANPDDSFMSL MLKAQRPGET  540
EGTGLLHDAV AHHSDDGARF MAYHLAEFGR YGNSSNVSLT LGLQHAENSL AVPPNTQPGF  600
PGVRDQDMYN ATAPPLNVAS TSSEYDSASQ IDQQQQRQRF EPSPLMHDFV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-16389446158Homeobox protein Meis1
4xrs_B8e-16389446158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.76960.0embryo| glume| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011588
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011588_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147963.20.0BEL1-related homeotic protein 30
RefseqXP_008675002.10.0BEL1-related homeotic protein 30 isoform X1
RefseqXP_008675010.10.0BEL1-related homeotic protein 30 isoform X1
RefseqXP_008675015.10.0BEL1-related homeotic protein 30 isoform X1
RefseqXP_020406839.10.0BEL1-related homeotic protein 30 isoform X1
TrEMBLA0A096PXB10.0A0A096PXB1_MAIZE; BEL1-like homeodomain protein 3
STRINGGRMZM2G011588_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-115BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]