PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G011588_P01 | ||||||||
Common Name | LOC100281572, Zm.7696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 651aa MW: 71815.7 Da PI: 5.9727 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.3 | 1.3e-08 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ L++++gLt +q+++WF N R + GRMZM2G011588_P01 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439 664559******************************88 PP | |||||||
2 | BELL | 121.4 | 3.9e-39 | 265 | 336 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+++l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi GRMZM2G011588_P01 265 EKQELQNKMAKLMTMLDEVDRKYKHYYHQMQLVMSSFNMVAGAGAAKPYTAVALQTISRHFRCLKDAINDQI 336 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.6E-57 | 189 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 7.4E-50 | 195 | 332 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 380 | 443 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 382 | 452 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-9 | 383 | 447 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-12 | 383 | 444 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-16 | 384 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-17 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MATYYSSPGS ERDSQTMYSA ESGNVSYPVP SALGNFLYTN NASSGPYTEF SGIVQPQQNF 60 MELTGHPSAM SHDSSSNEAT NMGSSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN 120 DAHSTVQLEF GMLNNHNSTS VPLAPGQGLS LSLNTHILAP SYPHWSAKQD LLTPNSYQGD 180 DNRMKNMQSE ASQAIRNSKY LKAAQELLDE IVSVWKCVKQ KTDKGPAEAG KADGKETDGG 240 IKSEGVSSNP QESGANAAAE LSTAEKQELQ NKMAKLMTML DEVDRKYKHY YHQMQLVMSS 300 FNMVAGAGAA KPYTAVALQT ISRHFRCLKD AINDQISVIR KKLGEDDNTS GKEGKLTRLR 360 YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR 420 QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNGQRN KDKAPSPEEN 480 EDLQTPTSQA CQTSQLGQSK AIVGGVMGFS GVLAGGFHTE ANPDDSFMSL MLKAQRPGET 540 EGTGLLHDAV AHHSDDGARF MAYHLAEFGR YGNSSNVSLT LGLQHAENSL AVPPNTQPGF 600 PGVRDQDMYN ATAPPLNVAS TSSEYDSASQ IDQQQQRQRF EPSPLMHDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 8e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7696 | 0.0 | embryo| glume| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G011588 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G011588_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957139 | 0.0 | EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147963.2 | 0.0 | BEL1-related homeotic protein 30 | ||||
Refseq | XP_008675002.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_008675010.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_008675015.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_020406839.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
TrEMBL | A0A096PXB1 | 0.0 | A0A096PXB1_MAIZE; BEL1-like homeodomain protein 3 | ||||
STRING | GRMZM2G011588_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-115 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G011588_P01 |
Entrez Gene | 100281572 |
Publications ? help Back to Top | |||
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