PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011422_P01
Common NameZEAMMB73_285542, Zm.13899
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 334aa    MW: 35857.8 Da    PI: 6.1794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011422_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd  l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  GRMZM2G011422_P01 14 KGPWSPEEDAMLKSYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding35.32.7e-1169111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  GRMZM2G011422_P01  69 GDFTPEEDGVICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                        789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.692962IPR017930Myb domain
SuperFamilySSF466892.63E-2612109IPR009057Homeodomain-like
SMARTSM007177.1E-131364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241569IPR009057Homeodomain-like
CDDcd001676.84E-101662No hitNo description
PROSITE profilePS5129420.47363117IPR017930Myb domain
SMARTSM007173.7E-967115IPR001005SANT/Myb domain
PfamPF002491.6E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSPE EDAMLKSYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTPEEDGVIC SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKRLLGR  120
RKDHRHHHHS AADAAATGES TNDGEPAAAL SASAMERIQL CMQLQSTHHQ HHPLPLMWPG  180
CNVVSGSGVA STQSNNSFNS NGSSSSVTVA EQGQLMNDQQ HLMTAQLEAG AAAAAAIDNG  240
LAASPSSAEN SNIIVSMEAE LQELLYGGAA DDGSRGGKAV DGGGGVVQQV DVAEWWSYDD  300
QQGKSSSSPV AVGCWDFTPE PNTAFLDYAS VYDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141177108B-MYB
3zqc_A2e-22141172103MYB3
3zqc_D2e-22141172103MYB3
3zqc_G2e-22141172103MYB3
3zqc_J2e-22141172103MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275283GGKAVDGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011422
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011422_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117881e-120AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678522.10.0transcription factor MYB36
TrEMBLK7TZ480.0K7TZ48_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G011422_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-75myb domain protein 36
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]