PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011236_P01
Common NameEREB62, Zm.131658
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 311aa    MW: 33506.4 Da    PI: 8.1242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011236_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1851101155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  GRMZM2G011236_P01  51 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 101
                        79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1951110IPR016177DNA-binding domain
PfamPF008473.6E-1251101IPR001471AP2/ERF domain
CDDcd000182.73E-1751109No hitNo description
PROSITE profilePS5103220.16552109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-2852109IPR001471AP2/ERF domain
SMARTSM003804.8E-3552115IPR001471AP2/ERF domain
PRINTSPR003676.0E-75364IPR001471AP2/ERF domain
PRINTSPR003676.0E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025287anatomyseedling coleoptile
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MELHFQPQPP VFQLEGYTSS SSYYYYYQQE AAAQAKPSKP RCRKKGSNNH SKFVGVRQRP  60
SGRWVAEIKD TTQKIRMWLG TFETAEAAAK AYDEAARLLR GSDARTNFAP RISPDCPLAV  120
RIRGLLHHKK IKKAKASAAA AAAKQQASSP PAPSPTTSNS NSHSHSTNSA CGGGSSSSSS  180
SSSSSVVSCD DAMAIQRGGI GVLGASEVYR PEFATAGAEE FDSWMFDSAF AQFPALDSFV  240
AVDSVVPVAG ATEEPIVAAT RGAEMAEFER IKVERRISAS LYAMNGLQEY FDRVLDASAC  300
DSLWDLSPLC H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011236
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011236_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276610.0KJ727661.1 Zea mays clone pUT5588 AP2-EREBP transcription factor (EREB62) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670505.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLA0A060D1000.0A0A060D100_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G011236_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-27related to AP2 11