PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G011110_P01
Common NameLOC100384507, ZEAMMB73_116386
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 262aa    MW: 26970.9 Da    PI: 4.4075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G011110_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-184089255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  GRMZM2G011110_P01 40 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 89
                       69****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-303997IPR001471AP2/ERF domain
SMARTSM003804.0E-3440103IPR001471AP2/ERF domain
PfamPF008476.2E-114089IPR001471AP2/ERF domain
PROSITE profilePS5103221.5754097IPR001471AP2/ERF domain
CDDcd000181.09E-174099No hitNo description
SuperFamilySSF541713.14E-194098IPR016177DNA-binding domain
PRINTSPR003676.6E-94152IPR001471AP2/ERF domain
PRINTSPR003676.6E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVKGAQLQDA AADAARNAAA AAARQQGCGG GGPAGCGKRQ YKGVRMRSWG SWVSEIRAPN  60
QKTRIWLGSY STAEAAARAY DAALLCLKGS AADLNFPVHL PFHIPAAAMS PKSIQRVAAA  120
AAANATCGSP LQAGAGAAAA APHYYSYSSS AASTMAADGA TPPCSYGDAS SGVSSPETAG  180
NTDDLCYGVA HDDDVDMVAG DADLAALADI ESFFRSPKCM EYAMMDPCST FFAPAPMATD  240
AASEWEWEEE GEIDLWSFSS LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-143097472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G011110
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G011110_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835320.0BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170503.10.0uncharacterized LOC100384507
TrEMBLK7U5M60.0K7U5M6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G011110_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-27ERF family protein