PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G010929_P02
Common NameZEAMMB73_401304, Zm.9037
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 439aa    MW: 46667.2 Da    PI: 10.6882
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G010929_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.1e-18302362357
                        --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+t+t eq++ L+el++    r ps e+++++++ l    +++ ++V++WFqN++a+e++
  GRMZM2G010929_P02 302 SRWTPTLEQIRMLKELYYGcdIRSPSSEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 362
                        7*****************7568*************************************97 PP
2Wus_type_Homeobox105.92.6e-34301364365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +RWtPt eQi++L+ely+ + +r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  GRMZM2G010929_P02 301 GSRWTPTLEQIRMLKELYYgCDIRSPSSEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKR 364
                        68****************9889****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1415711.57E-2169153No hitNo description
PfamPF008059.8E-1294132IPR001646Pentapeptide repeat
PROSITE profilePS500719.669297363IPR001356Homeobox domain
SuperFamilySSF466891.1E-9298366IPR009057Homeodomain-like
SMARTSM003891.7E-5299367IPR001356Homeobox domain
PfamPF000461.0E-15302362IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-6302362IPR009057Homeodomain-like
CDDcd000865.46E-4303364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009543Cellular Componentchloroplast thylakoid lumen
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0020136anatomyear inflorescence
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAILGALRLA PSPPALAGAA PPATSPYTAV RSSVHFRLAN AGAAALVAAS LLAADPAVAF  60
IGGGPYGKQV TRGQDLTGKD FSGQTLIKQD FKTSILRQAN FKGANLLGAS FFDADLTSAD  120
LSDADLRGAD LSLANLTKAN LSNANLEGAL ATGNTSFKDF TDVPLRDDQR EYLCKIADGW  180
RCLQYITFGT KDQVRFGYLS REVENFHKFL SFVTRGFIII GSIPKWRGET NLGGAGRWRD  240
RAEEVEADAN DSTAIAAASI AHGNPSPARS PALTRESGGA GGGAGGGSGS VVASAVCRPS  300
GSRWTPTLEQ IRMLKELYYG CDIRSPSSEQ IQRITAMLRQ HGKIEGKNVF YWFQNHKARE  360
RQKRRLTGST SWPRGGRGAR LERGRDRDGR GVVRGDGGRG RDSARRGEGR GDGAQGGDDA  420
GGAQIAWRGG ANRVRGGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n90_A3e-64591791128Thylakoid lumenal 15 kDa protein 1, chloroplastic
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276287SGGAGGGAGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.90370.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G010929
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G010929_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279000.0KJ727900.1 Zea mays clone pUT5994 HB transcription factor (HB26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G010929_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-31WOX family protein