PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G010871_P02 | ||||||||
Common Name | HSF24, LOC100280736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 357aa MW: 40502.5 Da PI: 4.7259 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.7 | 3.7e-33 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+++++ed++++ ++sws+ gnsf+v+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++l GRMZM2G010871_P02 46 FLTKTFDLVEDPATDAVLSWSRAGNSFIVWDPHVFADGLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHL 128 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l+ ikr+k GRMZM2G010871_P02 129 LKMIKRRKP 137 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.9E-37 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-58 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.98E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-30 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDKPVAPGII KEELLEQQPP TQDGVGGGGD APRPMEGLHE VGPPPFLTKT FDLVEDPATD 60 AVLSWSRAGN SFIVWDPHVF ADGLLPRLFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FLRGQRHLLK MIKRRKPPSA VAPLRQQRAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV 180 KLRQEQQSTK DHVRAMEERL RVAEQKQVQM MGFLARAMRN PEFFQQLAQQ QDKRKELEDT 240 ISKKRRRPID NTPFYSDGES EQLDSQLKMF ESGVLNGLNE PELENLAVNI QELGKGSIDD 300 GNLTQVSDQS ELNDDFWAEL LVEDFGDKAG QPELEGRTED VNDLAQQLGY LSSSSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | LKMIKRR |
2 | 232 | 246 | KRKELEDTISKKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28235 | 0.0 | endosperm| meristem| pericarp| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G010871 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and immature seeds. {ECO:0000269|PubMed:16202242}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G010871_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727859 | 0.0 | KJ727859.1 Zea mays clone pUT5950 HSF transcription factor (HSF24) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147128.2 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | NP_001353351.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_008673662.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673666.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673672.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673683.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | A0A060D206 | 0.0 | A0A060D206_MAIZE; HSF transcription factor (Fragment) | ||||
TrEMBL | A0A317YB41 | 0.0 | A0A317YB41_MAIZE; Heat stress transcription factor A-2c | ||||
STRING | GRMZM2G010871_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-109 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G010871_P02 |
Entrez Gene | 100280736 |
Publications ? help Back to Top | |||
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