PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G010871_P01 | ||||||||
Common Name | HSF24, LOC100280736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 357aa MW: 40502.5 Da PI: 4.7259 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.7 | 3.7e-33 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+++++ed++++ ++sws+ gnsf+v+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++l GRMZM2G010871_P01 46 FLTKTFDLVEDPATDAVLSWSRAGNSFIVWDPHVFADGLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHL 128 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l+ ikr+k GRMZM2G010871_P01 129 LKMIKRRKP 137 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.9E-37 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-58 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.98E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-30 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDKPVAPGII KEELLEQQPP TQDGVGGGGD APRPMEGLHE VGPPPFLTKT FDLVEDPATD 60 AVLSWSRAGN SFIVWDPHVF ADGLLPRLFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FLRGQRHLLK MIKRRKPPSA VAPLRQQRAP ASCLEVGEFG FEEEIDRLKR DKNILITEVV 180 KLRQEQQSTK DHVRAMEERL RVAEQKQVQM MGFLARAMRN PEFFQQLAQQ QDKRKELEDT 240 ISKKRRRPID NTPFYSDGES EQLDSQLKMF ESGVLNGLNE PELENLAVNI QELGKGSIDD 300 GNLTQVSDQS ELNDDFWAEL LVEDFGDKAG QPELEGRTED VNDLAQQLGY LSSSSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 27 | 135 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | LKMIKRR |
2 | 232 | 246 | KRKELEDTISKKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28235 | 0.0 | endosperm| meristem| pericarp| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G010871 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and immature seeds. {ECO:0000269|PubMed:16202242}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G010871_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727859 | 0.0 | KJ727859.1 Zea mays clone pUT5950 HSF transcription factor (HSF24) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147128.2 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | NP_001353351.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_008673662.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673666.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673672.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_008673683.1 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | A0A060D206 | 0.0 | A0A060D206_MAIZE; HSF transcription factor (Fragment) | ||||
TrEMBL | A0A317YB41 | 0.0 | A0A317YB41_MAIZE; Heat stress transcription factor A-2c | ||||
STRING | GRMZM2G010871_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-109 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G010871_P01 |
Entrez Gene | 100280736 |
Publications ? help Back to Top | |||
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