PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G010290_P01 | ||||||||
Common Name | ZEAMMB73_612645, Zm.159898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 420aa MW: 42100.6 Da PI: 8.5504 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.7e-38 | 105 | 166 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr vPvGgg+rknk+sss GRMZM2G010290_P01 105 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRSVPVGGGSRKNKRSSS 166 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 101 | 163 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.4E-33 | 107 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.742 | 109 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 111 | 147 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MAFLLSPRLT TPCIKRTTML SQGDVLQTCS AAAVLKHTAQ PYKSTSSKGV FCAVSLGLVK 60 PLEEMLMAAS AGAANPSQGS NPNPPPLAAP LTDAGSTERR ARPQKEKALN CPRCNSTNTK 120 FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR SVPVGGGSRK NKRSSSSSSS SSSSAAAASA 180 STSSSATSSS MASTPGAASK SPELAHEGAH DDLNLAFPHH GGLHAAEFAA FPSLESSNDM 240 CDQGGGMTSN GRGGGAGPAV GALSATELLR SSGCYMPLQM PGGDYTAAGF ALGEFRTPLL 300 PPPSSQSPLG FSLDAHGPGS SGAAAAAGYG SSAGLPQGVP GNAGRLLFPF EDLKPPVSPG 360 GGGVGGGGAS ATGGAGDGNS SHDQFDHNKE RGGGGGRGAG AGHDTPGFWS SMIGGSGASW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85932 | 0.0 | ear| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G010290 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G010290_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727765 | 0.0 | KJ727765.1 Zea mays clone pUT5711 C2C2-DOF transcription factor (DOF23) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352097.1 | 0.0 | dof zinc finger protein | ||||
Swissprot | Q9SXG8 | 1e-109 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | K7TVP9 | 0.0 | K7TVP9_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | GRMZM2G010290_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G010290_P01 |
Publications ? help Back to Top | |||
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