PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009892_P03
Common NameLOC100284412, Zm.139631
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 365aa    MW: 39040.6 Da    PI: 7.362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009892_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53111361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++ +  +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkd++v
  GRMZM2G009892_P03  11 LPPGFRFHPTDEELITHYLARKAADARFAA-LAVAEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDRDV 101
                        79*************************999.67***************8778899************************************* PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg kktLvfy+grap+gek+ Wvmheyrl
  GRMZM2G009892_P03 102 FR-GKALVGSKKTLVFYTGRAPRGEKSGWVMHEYRL 136
                        **.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-627174IPR003441NAC domain
PROSITE profilePS5100557.4611174IPR003441NAC domain
PfamPF023652.0E-2812136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEQEPHRPME LPPGFRFHPT DEELITHYLA RKAADARFAA LAVAEADLNK CEPWDLPSLA  60
RMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDRD VFRGKALVGS KKTLVFYTGR  120
APRGEKSGWV MHEYRLHAKL HGHGHGHGQG AAVVVVPKAA GTKNEWVLCR VFKKSLVVGG  180
AAAAAAPTAG KRGGTETSSN SKTGDVAAIS HLPPLMDVSG SGSGAAAAAA AHVTCFSDAL  240
EGQFLDQTTT TPPPEAAAAA TDDDGHLGAL AAASSSAFQL PGFAHYYYGG GAPHLHQHHG  300
AASLVQLLEG SVPPCNKGGE RERERERLSA SQDTGLTSDV NPEISSSSGQ RFDHDHDHHL  360
CCWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5321758166NO APICAL MERISTEM PROTEIN
1ut4_B4e-5321758166NO APICAL MERISTEM PROTEIN
1ut7_A4e-5321758166NO APICAL MERISTEM PROTEIN
1ut7_B4e-5321758166NO APICAL MERISTEM PROTEIN
3swm_A4e-53217511169NAC domain-containing protein 19
3swm_B4e-53217511169NAC domain-containing protein 19
3swm_C4e-53217511169NAC domain-containing protein 19
3swm_D4e-53217511169NAC domain-containing protein 19
3swp_A4e-53217511169NAC domain-containing protein 19
3swp_B4e-53217511169NAC domain-containing protein 19
3swp_C4e-53217511169NAC domain-containing protein 19
3swp_D4e-53217511169NAC domain-containing protein 19
4dul_A4e-5321758166NAC domain-containing protein 19
4dul_B4e-5321758166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1396310.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009892
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009892_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150779.20.0NAC domain protein NAC5
RefseqXP_020403374.10.0NAC domain protein NAC5 isoform X1
TrEMBLC0P5H40.0C0P5H4_MAIZE; NAC domain-containing protein 79
TrEMBLK0DFF70.0K0DFF7_MAIZE; NAC32 NAC type transcription factor (Fragment)
STRINGGRMZM2G009892_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-72NAC domain containing protein 100
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]