PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009892_P02
Common NameLOC100284412, Zm.139631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 365aa    MW: 39040.6 Da    PI: 7.362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009892_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53111361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++ +  +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkd++v
  GRMZM2G009892_P02  11 LPPGFRFHPTDEELITHYLARKAADARFAA-LAVAEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDRDV 101
                        79*************************999.67***************8778899************************************* PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg kktLvfy+grap+gek+ Wvmheyrl
  GRMZM2G009892_P02 102 FR-GKALVGSKKTLVFYTGRAPRGEKSGWVMHEYRL 136
                        **.99*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-627174IPR003441NAC domain
PROSITE profilePS5100557.4611174IPR003441NAC domain
PfamPF023652.0E-2812136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEQEPHRPME LPPGFRFHPT DEELITHYLA RKAADARFAA LAVAEADLNK CEPWDLPSLA  60
RMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDRD VFRGKALVGS KKTLVFYTGR  120
APRGEKSGWV MHEYRLHAKL HGHGHGHGQG AAVVVVPKAA GTKNEWVLCR VFKKSLVVGG  180
AAAAAAPTAG KRGGTETSSN SKTGDVAAIS HLPPLMDVSG SGSGAAAAAA AHVTCFSDAL  240
EGQFLDQTTT TPPPEAAAAA TDDDGHLGAL AAASSSAFQL PGFAHYYYGG GAPHLHQHHG  300
AASLVQLLEG SVPPCNKGGE RERERERLSA SQDTGLTSDV NPEISSSSGQ RFDHDHDHHL  360
CCWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5321758166NO APICAL MERISTEM PROTEIN
1ut4_B4e-5321758166NO APICAL MERISTEM PROTEIN
1ut7_A4e-5321758166NO APICAL MERISTEM PROTEIN
1ut7_B4e-5321758166NO APICAL MERISTEM PROTEIN
3swm_A4e-53217511169NAC domain-containing protein 19
3swm_B4e-53217511169NAC domain-containing protein 19
3swm_C4e-53217511169NAC domain-containing protein 19
3swm_D4e-53217511169NAC domain-containing protein 19
3swp_A4e-53217511169NAC domain-containing protein 19
3swp_B4e-53217511169NAC domain-containing protein 19
3swp_C4e-53217511169NAC domain-containing protein 19
3swp_D4e-53217511169NAC domain-containing protein 19
4dul_A4e-5321758166NAC domain-containing protein 19
4dul_B4e-5321758166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1396310.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009892
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009892_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150779.20.0NAC domain protein NAC5
RefseqXP_020403374.10.0NAC domain protein NAC5 isoform X1
TrEMBLC0P5H40.0C0P5H4_MAIZE; NAC domain-containing protein 79
TrEMBLK0DFF70.0K0DFF7_MAIZE; NAC32 NAC type transcription factor (Fragment)
STRINGGRMZM2G009892_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-72NAC domain containing protein 100
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]