PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G009892_P02 | ||||||||
Common Name | LOC100284412, Zm.139631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 39040.6 Da PI: 7.362 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.6 | 2.4e-53 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++k+++ ++ + +++e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkd++v GRMZM2G009892_P02 11 LPPGFRFHPTDEELITHYLARKAADARFAA-LAVAEADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDRDV 101 79*************************999.67***************8778899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++lvg kktLvfy+grap+gek+ Wvmheyrl GRMZM2G009892_P02 102 FR-GKALVGSKKTLVFYTGRAPRGEKSGWVMHEYRL 136 **.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-62 | 7 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-28 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MEQEPHRPME LPPGFRFHPT DEELITHYLA RKAADARFAA LAVAEADLNK CEPWDLPSLA 60 RMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDRD VFRGKALVGS KKTLVFYTGR 120 APRGEKSGWV MHEYRLHAKL HGHGHGHGQG AAVVVVPKAA GTKNEWVLCR VFKKSLVVGG 180 AAAAAAPTAG KRGGTETSSN SKTGDVAAIS HLPPLMDVSG SGSGAAAAAA AHVTCFSDAL 240 EGQFLDQTTT TPPPEAAAAA TDDDGHLGAL AAASSSAFQL PGFAHYYYGG GAPHLHQHHG 300 AASLVQLLEG SVPPCNKGGE RERERERLSA SQDTGLTSDV NPEISSSSGQ RFDHDHDHHL 360 CCWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 2 | 175 | 8 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 2 | 175 | 8 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 2 | 175 | 8 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 2 | 175 | 8 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 2 | 175 | 11 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 2 | 175 | 8 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 2 | 175 | 8 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.139631 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G009892 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G009892_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063543 | 0.0 | BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds. | |||
GenBank | BT084493 | 0.0 | BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150779.2 | 0.0 | NAC domain protein NAC5 | ||||
Refseq | XP_020403374.1 | 0.0 | NAC domain protein NAC5 isoform X1 | ||||
TrEMBL | C0P5H4 | 0.0 | C0P5H4_MAIZE; NAC domain-containing protein 79 | ||||
TrEMBL | K0DFF7 | 0.0 | K0DFF7_MAIZE; NAC32 NAC type transcription factor (Fragment) | ||||
STRING | GRMZM2G009892_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-72 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G009892_P02 |
Entrez Gene | 100284412 |
Publications ? help Back to Top | |||
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