PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G009478_P05 | ||||||||
Common Name | LOC100273866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 35268.4 Da PI: 6.1826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.3 | 5.9e-18 | 56 | 105 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq GRMZM2G009478_P05 56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-23 | 52 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-19 | 52 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.844 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.35E-17 | 56 | 109 | No hit | No description |
Pfam | PF00010 | 2.2E-15 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-13 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDSGSRSSGG AGFDDEDGLT TRREVSSSLQ DLAVRVDWKG GSCSDGGTNQ GPNTPRSKHS 60 ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKAQK YEATFPEWNQ 120 ENPTMLPWSK GQIPGDSPPD PSHFVRNGSS PGSNFTGKLD DNHTSAAASG ALDQAETNHV 180 ASGCYRSSET PANITNNAIS QSQPQWTGPS PVDDSAVKSE MLNSQELAID EGMISVSSTY 240 SQELLISLSH ALQSSGVDLS QTSISVQINL GKRAGKRSAS AGGVSSNSKE PPADPASSNE 300 LGGHHVTTLG ASADGLLPHA TKRHKRDNS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.40196 | 0.0 | ear| endosperm| meristem| ovary| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G009478 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G009478_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041949 | 0.0 | BT041949.1 Zea mays full-length cDNA clone ZM_BFb0086F14 mRNA, complete cds. | |||
GenBank | EU946368 | 0.0 | EU946368.1 Zea mays clone 305761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347406.1 | 0.0 | uncharacterized protein LOC100273866 | ||||
TrEMBL | B4FXW1 | 0.0 | B4FXW1_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G009478_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-55 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G009478_P05 |
Entrez Gene | 100273866 |