PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G009478_P03 | ||||||||
Common Name | LOC100273866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 37000.4 Da PI: 6.516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.2 | 6.3e-18 | 57 | 106 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq GRMZM2G009478_P03 57 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 106 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-23 | 53 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-19 | 55 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.844 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.05E-17 | 57 | 110 | No hit | No description |
Pfam | PF00010 | 2.3E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-13 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDSGSRSSGG AGFDDEDGLT TRREVSSSLQ ADLAVRVDWK GGSCSDGGTN QGPNTPRSKH 60 SATEQRRRSK INDRFQILRE LLPHNDQKRD KATFLLEVIE YIRFLQEKAQ KYEATFPEWN 120 QENPTMLPWS NMYFRSFWKN AQSKGQIPGD SPPDPSHFVR NGSSPGSNFT GKLDDNHTSA 180 AASGALDQAE TNHVASGCYR SSETPANITN NAISQSQPQW TGPSPVDDSA VKSEMLNSQE 240 LAIDEGMISV SSTYSQELLI SLSHALQSSG VDLSQTSISV QINLGKRAGK RSASAGGVSS 300 NSKEPPADPA SSNELGGHHV TTLGASADGL LPHATKRHKR DNS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.40196 | 0.0 | ear| endosperm| meristem| ovary| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G009478 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G009478_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949748 | 0.0 | EU949748.1 Zea mays clone 443309 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008667549.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A1D6ERS8 | 0.0 | A0A1D6ERS8_MAIZE; Transcription factor BIM3 | ||||
STRING | GRMZM2G009478_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-57 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G009478_P03 |