PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009478_P01
Common NameLOC100273866
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 506aa    MW: 53576.3 Da    PI: 7.1218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009478_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.41.1e-17233282255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  GRMZM2G009478_P01 233 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 282
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-23229299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18229300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-15233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-16233286No hitNo description
SMARTSM003538.8E-13237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYA AAAAAAAAKD APLLLHDSKT PPPSQGNFLL KTHDFLQPFD  60
QKPGAPPEPS PLPAPAAEIR HRQQVAVAKQ RALPLPLPGG VGTFSISPAP VSVALPSAVV  120
KSEPPPFVLW GQPAATLQPG ARGHQQQWAL PFAGSLQVSP PPQQAQPDRK GRGGGGVMDS  180
GSRSSGGAGF DDEDGLTTRR EVSSSLQDLA VRVDWKGGSC SDGGTNQGPN TPRSKHSATE  240
QRRRSKINDR FQILRELLPH NDQKRDKATF LLEVIEYIRF LQEKAQKYEA TFPEWNQENP  300
TMLPWSKGQI PGDSPPDPSH FVRNGSSPGS NFTGKLDDNH TSAAASGALD QAETNHVASG  360
CYRSSETPAN ITNNAISQSQ PQWTGPSPVD DSAVKSEMLN SQELAIDEGM ISVSSTYSQE  420
LLISLSHALQ SSGVDLSQTS ISVQINLGKR AGKRSASAGG VSSNSKEPPA DPASSNELGG  480
HHVTTLGASA DGLLPHATKR HKRDNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.401960.0ear| endosperm| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009478
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009478_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419490.0BT041949.1 Zea mays full-length cDNA clone ZM_BFb0086F14 mRNA, complete cds.
GenBankEU9463680.0EU946368.1 Zea mays clone 305761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347406.10.0uncharacterized protein LOC100273866
TrEMBLA0A1D6ERR60.0A0A1D6ERR6_MAIZE; Transcription factor BIM3
STRINGGRMZM2G009478_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-53BES1-interacting Myc-like protein 2