PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G009060_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 359aa    MW: 39861.2 Da    PI: 7.6978
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G009060_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.91.2e-3452106155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl
  GRMZM2G009060_P01  52 KPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 106
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.30249109IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-3350107IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1851107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2452107IPR006447Myb domain, plants
PfamPF002499.2E-1154105IPR001005SANT/Myb domain
PfamPF143793.3E-25154200IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSSCQMYHHQ QQLQSHSHFL SSRQTFPPER HMLLQGGSIP AEPGLVLSTD AKPRLKWTPE  60
LHERFVEAVN QLGGPDKATP KTIMRLMGVP GLTLYHLKSH LQKYRLSKNI HAQANGVNAK  120
NVIGCTMAMD KPLEGNGSPA SHLNLGTQTN KSVHIGEALQ MQIEVQRRLH EQLEVQRHLQ  180
LRIEAQGKYL QSVLEKAQET LSKQNAGSVG VETAKMQLSE LVSKVSTECL QHAFTGFEEI  240
DGSQILQGHT IQLGDGSVDS CLTACDGSQK DQDILSISLS AHRGKEIGGM TFDIQEKERG  300
REDLFLDKLS MTPPGQLDRR ERGSFSMTRK AAKLDLNIND TTDGPQNCKK IDLNGFNWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2152108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2152108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2152108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2152108157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G009060
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G009060_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9437120.0EU943712.1 Zea mays clone 1680873 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655182.10.0myb-related protein 2
SwissprotQ9SQQ91e-102PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1D6K1880.0A0A1D6K188_MAIZE; Myb-related protein 2
STRINGGRMZM2G009060_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-102G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]