PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G008898_P01 | ||||||||
Common Name | bHLH73, LOC103648225, Zm.86460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27302.4 Da PI: 9.7597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 133 | 180 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka++L + ++YI+sLq GRMZM2G008898_P01 133 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKASVLDEIINYIQSLQ 180 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.30E-10 | 127 | 184 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-18 | 127 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-19 | 129 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-9 | 133 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 135 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDPASSVAAE FWRPPYHHLR ASSVVTAAAR SGGGSSSRRR PRRDAAASSE EEPSKLVSTS 60 GTAASSSAGC QDSADPEAKR LKQIAPSEKN DRRTEAETNS GNASKSADKK PAPKEPPKDY 120 IHVRARRGQA TDSHSLAERA RREKISERMK VLQDIVPGCN KVIGKASVLD EIINYIQSLQ 180 RQVEFLSMKL EAINAHVSNA TVAFPTKDFG VAPYNTAPSL TLDPQTPREY AQGSMSDWLH 240 MQVGNAYERV T |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86460 | 0.0 | meristem| sheath| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G008898 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G008898_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727745 | 0.0 | KJ727745.1 Zea mays clone pUT5686 bHLH transcription factor (bHLH73) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670933.1 | 0.0 | transcription factor BHLH094 | ||||
Swissprot | Q69WS3 | 1e-115 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A060CXJ6 | 0.0 | A0A060CXJ6_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G008898_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 9e-62 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G008898_P01 |
Entrez Gene | 103648225 |