PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008691_P03
Common NamebHLH36, IDP1980, ZEAMMB73_940723
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 345aa    MW: 36389.2 Da    PI: 8.3359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008691_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13135186155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +rr+h ++Er+RR+++N+ ++ Lr+ lP++   + ++ + a+i+  A++++k+L+
  GRMZM2G008691_P03 135 QRRNHIAVERNRRRQMNEYLSVLRSALPPS---YPQRGDQASIVAGAINFVKELE 186
                        79***************************9...99*****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.51E-14133190No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-9140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.505263340IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALEAVVFPK EHLAGTAKAR SASSLACGFR TEEVEDNGGV VLQGEASDAP GAGAATTWEC  60
WDAALCPCST PPAGAVEECW DDVRHRLSAS PPLPPAPSAA VAAPSSGHGK AAAAARRRRR  120
QRPKAVKNTE EVESQRRNHI AVERNRRRQM NEYLSVLRSA LPPSYPQRGD QASIVAGAIN  180
FVKELEHLLQ SLEAQKRRRQ GCTEPPAPAP FAGLFTFPQY STAATGVVAG SGDGAGSGGG  240
ACAAGARRGV ADIEVAVAES HASVKVVTPR RPRQLLRMVV ALQCLGLTVL HLNVTTTADQ  300
LVLYSLSLKM EDQCRLSSVD DIAAAVNDIL GKISDERASR HLLAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136146RNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.298790.0meristem| ovary| pedicel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008691
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008691_P03
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605120.0BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132188.20.0uncharacterized protein LOC100193615
SwissprotQ9C7T47e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLC0HDV60.0C0HDV6_MAIZE; BHLH transcription factor
STRINGGRMZM2G008691_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-64bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]