PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008374_P02
Common NameZm.2445
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 409aa    MW: 45014 Da    PI: 9.6469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008374_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55211561128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+
  GRMZM2G008374_P02  21 LPPGFRFHPTDEELITYYLRRKIADGRFTA-RAIAEVDLNKSEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEI 111
                        79*************************999.89***************99999*************************************** PP

                NAM  93 lskkgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                        ++++++l         vg+kktLvfykgrap+gekt+Wvmheyrl
  GRMZM2G008374_P02 112 YTAGHQLpaaattpelVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 156
                        **84444677777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6117198IPR003441NAC domain
PROSITE profilePS5100559.20721198IPR003441NAC domain
PfamPF023652.4E-2922156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEASAAAGGG RESNKKEEES LPPGFRFHPT DEELITYYLR RKIADGRFTA RAIAEVDLNK  60
SEPWDLPEKA KLGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IYTAGHQLPA  120
AATTPELVGM KKTLVFYKGR APRGEKTNWV MHEYRLHSKS LPKSNKLEWI DKFMKMFFGY  180
LYGTGAQDEW VVCRVFAKSA AAKKYPSNNA HAHARSSHHH PYALDMFPPL LPTLLQHDPF  240
VARRHHHHHP YMAPADLAEL ARFARGTPGL HPHIQPHPGT SSSAPYMNPA VAAPPFTLSG  300
GGRLNLNLGA TPAMPSSPPA LHAMSMAMMS GQTEPSCAST GRQYHQVMAG EHHQQKQMAT  360
AAAAGLGGCV IVPGADGGFG ADSAAGARYQ GLDVEQLVER YWPAGGYQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5692045171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5692045171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5692045171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5692045171NO APICAL MERISTEM PROTEIN
3swm_A2e-5692048174NAC domain-containing protein 19
3swm_B2e-5692048174NAC domain-containing protein 19
3swm_C2e-5692048174NAC domain-containing protein 19
3swm_D2e-5692048174NAC domain-containing protein 19
3swp_A2e-5692048174NAC domain-containing protein 19
3swp_B2e-5692048174NAC domain-containing protein 19
3swp_C2e-5692048174NAC domain-containing protein 19
3swp_D2e-5692048174NAC domain-containing protein 19
4dul_A2e-5692045171NAC domain-containing protein 19
4dul_B2e-5692045171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008374
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008374_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670296.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ21e-77NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1D6ESJ50.0A0A1D6ESJ5_MAIZE; NAC domain containing protein 38
STRINGGRMZM2G008374_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-92NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]