PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008374_P01
Common NameLOC103647555, Zm.2445
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 388aa    MW: 42486.1 Da    PI: 9.7046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008374_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55211561128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+
  GRMZM2G008374_P01  21 LPPGFRFHPTDEELITYYLRRKIADGRFTA-RAIAEVDLNKSEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEI 111
                        79*************************999.89***************99999*************************************** PP

                NAM  93 lskkgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                        ++++++l         vg+kktLvfykgrap+gekt+Wvmheyrl
  GRMZM2G008374_P01 112 YTAGHQLpaaattpelVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 156
                        **84444677777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6317177IPR003441NAC domain
PROSITE profilePS5100560.44921177IPR003441NAC domain
PfamPF023652.2E-2922156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEASAAAGGG RESNKKEEES LPPGFRFHPT DEELITYYLR RKIADGRFTA RAIAEVDLNK  60
SEPWDLPEKA KLGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IYTAGHQLPA  120
AATTPELVGM KKTLVFYKGR APRGEKTNWV MHEYRLHSKS LPKSNKDEWV VCRVFAKSAA  180
AKKYPSNNAH AHARSSHHHP YALDMFPPLL PTLLQHDPFV ARRHHHHHPY MAPADLAELA  240
RFARGTPGLH PHIQPHPGTS SSAPYMNPAV AAPPFTLSGG GRLNLNLGAT PAMPSSPPAL  300
HAMSMAMMSG QTEPSCASTG RQYHQVMAGE HHQQKQMATA AAAGLGGCVI VPGADGGFGA  360
DSAAGARYQG LDVEQLVERY WPAGGYQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-5991835171NO APICAL MERISTEM PROTEIN
1ut4_B6e-5991835171NO APICAL MERISTEM PROTEIN
1ut7_A6e-5991835171NO APICAL MERISTEM PROTEIN
1ut7_B6e-5991835171NO APICAL MERISTEM PROTEIN
4dul_A6e-5991835171NAC domain-containing protein 19
4dul_B6e-5991835171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008374
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008374_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670296.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ22e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1D6ESJ50.0A0A1D6ESJ5_MAIZE; NAC domain containing protein 38
STRINGGRMZM2G008374_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.23e-94NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]