PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006871_P01
Common NameLOC100277156, ZEAMMB73_466571, Zm.79754
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 270aa    MW: 28395.8 Da    PI: 8.4615
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006871_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.42e-1350147397
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkife 90 
                        f r+wse De+ +L Gl  ++a +g++p    ++a      +  +++++ +++ eK+rrL+ K+ ++++                ++   +e
  GRMZM2G006871_P01  50 FGRVWSEADEVRILEGLAAYAAAHGAEPRRsQLHAALGG-CGLDKSEFTVTEIYEKVRRLRTKYANRRSAggvPVPAAAGGAGDGDEARKYE 140
                        88***********************99887344444333.3455889999*****************99944312222334456678889** PP

             DUF573  91 lskkiWg 97 
                        ls++iWg
  GRMZM2G006871_P01 141 LSRSIWG 147
                        ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-1850147IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPPPPTSAPH SLAADDFHTS DTAAAAAGAV VPCAASQPGT NGGKKPAFAF GRVWSEADEV  60
RILEGLAAYA AAHGAEPRRS QLHAALGGCG LDKSEFTVTE IYEKVRRLRT KYANRRSAGG  120
VPVPAAAGGA GDGDEARKYE LSRSIWGDLP LKKVGASHAT NASGNGNGNA NANAAPGTRA  180
RRGIEELQGL YPSLASAVEG ITDNESLRPV LKRAFQLISD ERARQLDAKV KKQRDMEAQM  240
AVKVTALRNE VLDTLTGSMD CFINDVKYEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.797540.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006871
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006871_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0842590.0BT084259.1 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144278.20.0uncharacterized protein LOC100277156
TrEMBLA0A3L6G6P70.0A0A3L6G6P7_MAIZE; Uncharacterized protein
TrEMBLC4J0B20.0C4J0B2_MAIZE; Tyrosine specific protein phosphatase-like
TrEMBLK0DCT80.0K0DCT8_MAIZE; GBP11 GeBP type transcription factor (Fragment)
STRINGGRMZM2G006871_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199
Representative plantOGRP1703022
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]