PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006871_P01 | ||||||||
Common Name | LOC100277156, ZEAMMB73_466571, Zm.79754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 270aa MW: 28395.8 Da PI: 8.4615 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 42.4 | 2e-13 | 50 | 147 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkife 90 f r+wse De+ +L Gl ++a +g++p ++a + +++++ +++ eK+rrL+ K+ ++++ ++ +e GRMZM2G006871_P01 50 FGRVWSEADEVRILEGLAAYAAAHGAEPRRsQLHAALGG-CGLDKSEFTVTEIYEKVRRLRTKYANRRSAggvPVPAAAGGAGDGDEARKYE 140 88***********************99887344444333.3455889999*****************99944312222334456678889** PP DUF573 91 lskkiWg 97 ls++iWg GRMZM2G006871_P01 141 LSRSIWG 147 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.5E-18 | 50 | 147 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MPPPPTSAPH SLAADDFHTS DTAAAAAGAV VPCAASQPGT NGGKKPAFAF GRVWSEADEV 60 RILEGLAAYA AAHGAEPRRS QLHAALGGCG LDKSEFTVTE IYEKVRRLRT KYANRRSAGG 120 VPVPAAAGGA GDGDEARKYE LSRSIWGDLP LKKVGASHAT NASGNGNGNA NANAAPGTRA 180 RRGIEELQGL YPSLASAVEG ITDNESLRPV LKRAFQLISD ERARQLDAKV KKQRDMEAQM 240 AVKVTALRNE VLDTLTGSMD CFINDVKYEG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79754 | 0.0 | endosperm| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006871 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006871_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084259 | 0.0 | BT084259.1 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144278.2 | 0.0 | uncharacterized protein LOC100277156 | ||||
TrEMBL | A0A3L6G6P7 | 0.0 | A0A3L6G6P7_MAIZE; Uncharacterized protein | ||||
TrEMBL | C4J0B2 | 0.0 | C4J0B2_MAIZE; Tyrosine specific protein phosphatase-like | ||||
TrEMBL | K0DCT8 | 0.0 | K0DCT8_MAIZE; GBP11 GeBP type transcription factor (Fragment) | ||||
STRING | GRMZM2G006871_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 | Representative plant | OGRP17030 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006871_P01 |
Entrez Gene | 100277156 |
Publications ? help Back to Top | |||
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