PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006752_P02 | ||||||||
Common Name | LOC100216639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | EIL | ||||||||
Protein Properties | Length: 609aa MW: 68145.6 Da PI: 6.304 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 416.6 | 2.7e-127 | 38 | 414 | 1 | 351 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 e+l +rmwkd+++l+r+ker+ +l ++a++++ + + +++qa rkkmsra DgiLkYMlk m+vcna+GfvYgiip+kgkpv+gasd++r GRMZM2G006752_P02 38 EDLARRMWKDRVRLRRIKERQHKLA-LQQAELQKLRPKPISDQAMRKKMSRAHDGILKYMLKLMQVCNARGFVYGIIPDKGKPVSGASDNIR 128 89*******************9865.666679999********************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS EIN3 93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184 aWWkekv+fd+ngpaai ky+++nl+++ ++s +++++hsl++lqD+tlgSLLs+lmqhcdppqr++plekg +pPWWP+Gke+ww +l GRMZM2G006752_P02 129 AWWKEKVKFDKNGPAAIEKYESDNLVSATAQSG---GTKSQHSLMDLQDATLGSLLSSLMQHCDPPQRKYPLEKGASPPWWPSGKEEWWTAL 217 **************************9988888...88****************************************************** PP T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX....XXXXXX CS EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss....slrkqs 271 gl+ q ppykkphdlkk+wk +vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee++++++ s+ s+ +++ GRMZM2G006752_P02 218 GLPSGQV-PPYKKPHDLKKVWKAGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLGVLQREESLVHRIDNGvSEitqrSMPEER 308 ****999.9******************************************************************99996445555777799 PP XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...............................XXXXXXXXXXXXXXXXXXXXX......XXX CS EIN3 272 pkvtlsceqkedvegkkeskikhvqavktta...............................gfpvvrkrkkkpsesakvsskevsrtcqss 332 + t s+++++dv g ++ +++++++++++ +++ krk+ +++s+ ++ + GRMZM2G006752_P02 309 IADTNSSSNEYDVYGFEDAPVSTSSKDDEQDlspvaqsavehvpkrgreraynkrpnqivpgKAKEPPKRKRTRHSSTVTEPDA----HRVV 396 99999*********9999998999999999999999**9999999999999999997777766666666665555555444432....2333 PP XXXX.XXXXXXXXXXXXXX CS EIN3 333 qfrgsetelifadknsisq 351 + +++++ ++d+n+++q GRMZM2G006752_P02 397 DAP-ENSRNLIPDMNRLDQ 414 333.356677777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 7.5E-123 | 38 | 286 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 3.9E-69 | 161 | 293 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.16E-59 | 166 | 289 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042762 | Biological Process | regulation of sulfur metabolic process | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MDQLALLATE LGDSSDFEVE GIQNLTENDV SDEEIEPEDL ARRMWKDRVR LRRIKERQHK 60 LALQQAELQK LRPKPISDQA MRKKMSRAHD GILKYMLKLM QVCNARGFVY GIIPDKGKPV 120 SGASDNIRAW WKEKVKFDKN GPAAIEKYES DNLVSATAQS GGTKSQHSLM DLQDATLGSL 180 LSSLMQHCDP PQRKYPLEKG ASPPWWPSGK EEWWTALGLP SGQVPPYKKP HDLKKVWKAG 240 VLTGVIKHMS PNFDKIRNHV RKSKCLQDKM TAKESLIWLG VLQREESLVH RIDNGVSEIT 300 QRSMPEERIA DTNSSSNEYD VYGFEDAPVS TSSKDDEQDL SPVAQSAVEH VPKRGRERAY 360 NKRPNQIVPG KAKEPPKRKR TRHSSTVTEP DAHRVVDAPE NSRNLIPDMN RLDQVEIPGT 420 SNQIVTFDHG GTTTEALQHR GDAQVQVHPP GAEVNSFYSA PTANPTPISI YMGDQPIPYQ 480 NNDSTRPRSE NSFPVDAHTG LNNLPSSYQN LPPKQSLPLP MMDHHVVPMG IRAPTDSIPY 540 GDHILGGGNS TSVPGDMQQL IDFPFYAEQD KFVGSSFEGL PLDYISISSP IPDIDDLLHD 600 DDLMEYLGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wij_A | 2e-63 | 166 | 291 | 9 | 134 | ETHYLENE-INSENSITIVE3-like 3 protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.30220 | 0.0 | endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006752 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00649 | PBM | Transfer from LOC_Os09g31400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006752_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062636 | 0.0 | BT062636.1 Zea mays full-length cDNA clone ZM_BFb0325I05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346402.1 | 0.0 | uncharacterized protein LOC100216639 | ||||
Refseq | XP_023156230.1 | 0.0 | uncharacterized protein LOC100216639 isoform X1 | ||||
Swissprot | O23116 | 1e-141 | EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | A0A3L6DZH7 | 0.0 | A0A3L6DZH7_MAIZE; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | C0P2W7 | 0.0 | C0P2W7_MAIZE; EIL transcription factor | ||||
STRING | GRMZM2G006752_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3720 | 37 | 79 | Representative plant | OGRP563 | 16 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73730.1 | 1e-141 | ETHYLENE-INSENSITIVE3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006752_P02 |
Entrez Gene | 100216639 |
Publications ? help Back to Top | |||
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