PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006745_P04 | ||||||||
Common Name | DBP1a, DREB2, ZEAMMB73_291925, Zm.7368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26545.2 Da PI: 4.0446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++g GRMZM2G006745_P04 12 CGYRGVRQRT-WGKWVAEIREP---N-RvDRLWLGTFPTAEDAARAYDEAARAMYG 62 79*****999.**********8...2.58***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.14E-31 | 12 | 70 | No hit | No description |
Pfam | PF00847 | 8.6E-14 | 12 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 13 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 14 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKGKGGPDNT QCGYRGVRQR TWGKWVAEIR EPNRVDRLWL GTFPTAEDAA RAYDEAARAM 60 YGDLARTNFP GQDATTSAQA ALSSTSAQAA PTAVEALQTG TSCESTTTSN HSDIASTSHK 120 LEASDISSYL KEKCPAGSCG IQDGTPIVAD KEVFGPLEPI TNLPDGGDGF DIGEMLRMME 180 SDPHNAGGAD AGMGQPWYLD ELDSSVLESM LQPEPEPEPE PFLMSEEPDM FLAGFESAGF 240 VEGLERLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7368 | 0.0 | cell culture| ear| endosperm| leaf| meristem| ovary| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006745 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006745_P04 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062587 | 0.0 | BT062587.1 Zea mays full-length cDNA clone ZM_BFb0317N19 mRNA, complete cds. | |||
GenBank | BT084225 | 0.0 | BT084225.1 Zea mays full-length cDNA clone ZM_BFb0090O13 mRNA, complete cds. | |||
GenBank | FJ805747 | 0.0 | FJ805747.1 Zea mays DRE-binding protein 1a (DBP1a) mRNA, complete cds. | |||
GenBank | FJ805748 | 0.0 | FJ805748.1 Zea mays DRE-binding protein 1c (DBP1c) mRNA, complete cds. | |||
GenBank | FJ805749 | 0.0 | FJ805749.1 Zea mays DRE-binding protein 1b (DBP1b) mRNA, complete cds. | |||
GenBank | JF915834 | 0.0 | JF915834.1 Zea mays dehydration responsive element binding protein 2 (DREB2) and dehydration responsive element binding protein 2 isoform b (DREB2) genes, complete cds, alternatively spliced. | |||
GenBank | JF915835 | 0.0 | JF915835.1 Zea mays dehydration responsive element binding protein 2 isoform c (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915836 | 0.0 | JF915836.1 Zea mays dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915837 | 0.0 | JF915837.1 Zea mays dehydration responsive element binding protein 2 isoform b (DREB2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292874.1 | 0.0 | dehydration-responsive element binding protein 2A isoform 2 | ||||
Refseq | XP_020397925.1 | 0.0 | dehydration-responsive element binding protein 2A isoform X4 | ||||
Refseq | XP_023156565.1 | 0.0 | dehydration-responsive element binding protein 2A isoform X3 | ||||
Swissprot | Q5W6R4 | 6e-50 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A1D6FNX0 | 0.0 | A0A1D6FNX0_MAIZE; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | C0P2R8 | 0.0 | C0P2R8_MAIZE; Dehydration responsive element binding protein 2 isoform b | ||||
STRING | GRMZM2G006745_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006745_P04 |
Entrez Gene | 732788 |
Publications ? help Back to Top | |||
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