PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006745_P03 | ||||||||
Common Name | DBP1a, DREB2, ZEAMMB73_291925, Zm.7368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26545.2 Da PI: 4.0446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++g GRMZM2G006745_P03 12 CGYRGVRQRT-WGKWVAEIREP---N-RvDRLWLGTFPTAEDAARAYDEAARAMYG 62 79*****999.**********8...2.58***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.14E-31 | 12 | 70 | No hit | No description |
Pfam | PF00847 | 8.6E-14 | 12 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 13 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 14 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKGKGGPDNT QCGYRGVRQR TWGKWVAEIR EPNRVDRLWL GTFPTAEDAA RAYDEAARAM 60 YGDLARTNFP GQDATTSAQA ALSSTSAQAA PTAVEALQTG TSCESTTTSN HSDIASTSHK 120 LEASDISSYL KEKCPAGSCG IQDGTPIVAD KEVFGPLEPI TNLPDGGDGF DIGEMLRMME 180 SDPHNAGGAD AGMGQPWYLD ELDSSVLESM LQPEPEPEPE PFLMSEEPDM FLAGFESAGF 240 VEGLERLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7368 | 0.0 | cell culture| ear| endosperm| leaf| meristem| ovary| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006745 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006745_P03 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062587 | 0.0 | BT062587.1 Zea mays full-length cDNA clone ZM_BFb0317N19 mRNA, complete cds. | |||
GenBank | BT084225 | 0.0 | BT084225.1 Zea mays full-length cDNA clone ZM_BFb0090O13 mRNA, complete cds. | |||
GenBank | FJ805747 | 0.0 | FJ805747.1 Zea mays DRE-binding protein 1a (DBP1a) mRNA, complete cds. | |||
GenBank | FJ805748 | 0.0 | FJ805748.1 Zea mays DRE-binding protein 1c (DBP1c) mRNA, complete cds. | |||
GenBank | FJ805749 | 0.0 | FJ805749.1 Zea mays DRE-binding protein 1b (DBP1b) mRNA, complete cds. | |||
GenBank | JF915834 | 0.0 | JF915834.1 Zea mays dehydration responsive element binding protein 2 (DREB2) and dehydration responsive element binding protein 2 isoform b (DREB2) genes, complete cds, alternatively spliced. | |||
GenBank | JF915835 | 0.0 | JF915835.1 Zea mays dehydration responsive element binding protein 2 isoform c (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915836 | 0.0 | JF915836.1 Zea mays dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915837 | 0.0 | JF915837.1 Zea mays dehydration responsive element binding protein 2 isoform b (DREB2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292874.1 | 0.0 | dehydration-responsive element binding protein 2A isoform 2 | ||||
Refseq | XP_020397925.1 | 0.0 | dehydration-responsive element binding protein 2A isoform X4 | ||||
Refseq | XP_023156565.1 | 0.0 | dehydration-responsive element binding protein 2A isoform X3 | ||||
Swissprot | Q5W6R4 | 6e-50 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A1D6FNX0 | 0.0 | A0A1D6FNX0_MAIZE; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | C0P2R8 | 0.0 | C0P2R8_MAIZE; Dehydration responsive element binding protein 2 isoform b | ||||
STRING | GRMZM2G006745_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006745_P03 |
Entrez Gene | 732788 |
Publications ? help Back to Top | |||
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