PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006745_P01 | ||||||||
Common Name | DBP1c, DREB2, ZEAMMB73_291925, Zm.7368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 34617.5 Da PI: 4.6733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.3e-20 | 83 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++g GRMZM2G006745_P01 83 CGYRGVRQRT-WGKWVAEIREP---N-RvDRLWLGTFPTAEDAARAYDEAARAMYG 133 79*****999.**********8...2.58***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-13 | 83 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.94E-30 | 83 | 141 | No hit | No description |
SMART | SM00380 | 4.1E-34 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 84 | 141 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.576 | 84 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-32 | 85 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTLDQNHAMP MQPPALQPGR KKRPRRSRDG PTSVAAVIQR WAERNKHLEY EESEEAKRPR 60 KAPAKGSKKG CMKGKGGPDN TQCGYRGVRQ RTWGKWVAEI REPNRVDRLW LGTFPTAEDA 120 ARAYDEAARA MYGDLARTNF PGQDATTSAQ AALSSTSAQA APTAVEALQT GTSCESTTTS 180 NHSDIASTSH KLEASDISSY LKEKCPAGSC GIQDGTPIVA DKEVFGPLEP ITNLPDGGDG 240 FDIGEMLRMM ESDPHNAGGA DAGMGQPWYL DELDSSVLES MLQPEPEPEP EPFLMSEEPD 300 MFLAGFESAG FVEGLERLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 85 | 141 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7368 | 0.0 | cell culture| ear| endosperm| leaf| meristem| ovary| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006745 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006745_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ805748 | 0.0 | FJ805748.1 Zea mays DRE-binding protein 1c (DBP1c) mRNA, complete cds. | |||
GenBank | JF915836 | 0.0 | JF915836.1 Zea mays dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105876.2 | 0.0 | dehydration-responsive element binding protein 2A isoform 3 | ||||
Swissprot | Q5W6R4 | 3e-72 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | C3UZ65 | 0.0 | C3UZ65_MAIZE; DRE-binding protein 1c | ||||
STRING | GRMZM2G006745_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 2e-31 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006745_P01 |
Entrez Gene | 732788 |
Publications ? help Back to Top | |||
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