PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006631_P01
Common NameLOC103631833
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 331aa    MW: 35820.1 Da    PI: 6.5101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006631_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-14120171155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r +h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  GRMZM2G006631_P01 120 QRITHIAVERNRRRQMNEYLAVLRSLMPPS---HAHRGDQASIVGGAINYVRELE 171
                        799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-14118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.20E-15118175No hitNo description
SuperFamilySSF474592.36E-17119187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVVFSQ PQAGHFGCGR GDSPYAVPWS DLLQGGGGGG FGDVCAAGEW VDQHDLDTCW  60
AAPTVGDDWD WGEALSRDHS SSDAASTDHG SRKAAPEPAA GRRKRRRTRV VKNKEEIESQ  120
RITHIAVERN RRRQMNEYLA VLRSLMPPSH AHRGDQASIV GGAINYVREL EQLLQSLEVQ  180
KSLKQSRGRR PAGGGASCSP PFAGFFSFPQ YSTAPSTTSS SGGEKCCGHD AAAADIEVTM  240
VEGHASLKVL ARRRPKQLLK LVAGLHQLRV PPLHLNVTAA VDAMVLYTFS LKVEDDSKMG  300
SVEDIATAVH EILGSIQRQQ QEEEEEETAA M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106RKRRR
2102107RKRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.203080.0ear| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006631
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006631_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9613970.0EU961397.1 Zea mays clone 235094 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651833.10.0transcription factor bHLH96 isoform X1
TrEMBLA0A1D6JR540.0A0A1D6JR54_MAIZE; Transcription factor bHLH99
TrEMBLA0A317Y8W70.0A0A317Y8W7_MAIZE; Transcription factor bHLH96
STRINGGRMZM2G006631_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-62bHLH family protein