PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006493_P01
Common NameLOC100272717, LOC100284844, ZEAMMB73_692678
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 524aa    MW: 56537.4 Da    PI: 7.3453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006493_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.7e-10107132126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C++++++GtC++G +CkF+H+
  GRMZM2G006493_P01 107 PGEPDCSYYLKFGTCRFGMKCKFNHP 132
                        5789*********************8 PP
2zf-CCCH25.22.8e-08235257325
                        S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                        +e+C++++  G Ck+G +Ck+ H
  GRMZM2G006493_P01 235 QEECKYYSTPGGCKFGKTCKYLH 257
                        589******************** PP
3zf-CCCH33.38.2e-11282306226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++++C++++rtG Ck+  +CkF+H+
  GRMZM2G006493_P01 282 GEKECPYYMRTGSCKFATNCKFHHP 306
                        7899********************9 PP
4zf-CCCH20.49.3e-07428454127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Cky  +C+++H++
  GRMZM2G006493_P01 428 PGQPECQHFVKSGFCKYRMKCRYHHPR 454
                        5789*********************96 PP
5zf-CCCH24.83.8e-08475500227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++ r+G+CkyG+ C F+H++
  GRMZM2G006493_P01 475 DQPVCTYYGRYGFCKYGPACMFNHPF 500
                        6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746106134IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5111134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313232260IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4233259IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6235257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5236260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4238259IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793280308IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7282306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4286305IPR000571Zinc finger, CCCH-type
SMARTSM003560.018427454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77427455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5431456IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4473500IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483473501IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5474501IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5475500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MADADAKSQP PDAAASPDAS ISSPSSLGGG GGDAADADAI EKQLAGLGIA VAGGFPEPSG  60
WDDGPVPVPI PADVLVGGDE GAGEKPRAPA PAPTGAVDVK VRFPRRPGEP DCSYYLKFGT  120
CRFGMKCKFN HPARKKKTSR VRGVGSNGSG SNSSSNKASS PDDDQAPKEE YEGLVPDISD  180
SMVIDMKRGK LEPKEKVCEE PEKAIHFTKL DETNIATQKG SKDKRKETFA EGNTQEECKY  240
YSTPGGCKFG KTCKYLHREG NGGKTEVEKA ELNFLGLPLR PGEKECPYYM RTGSCKFATN  300
CKFHHPDPTN ASSKEPGLEH ENGDVPLQNV QGSSQPSLQM WPDQRALNEQ HVPFLAPAPS  360
YSGGMVPPQG MYPSSDWSGY HQVPLNPYYP PGVPFPHFPA AHMNHPMYKA ADIPGHQPPP  420
SDEYPERPGQ PECQHFVKSG FCKYRMKCRY HHPRSRQSAP PPAGLSPIGL PIKPDQPVCT  480
YYGRYGFCKY GPACMFNHPF NFGPPVPAAG PPLPGQYPTH GNFA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006493_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698660.0EU969866.1 Zea mays clone 336566 zinc finger CCCH type domain-containing protein ZFN-like 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151211.10.0uncharacterized protein LOC100272717 isoform 2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB6TY010.0B6TY01_MAIZE; Zinc finger CCCH type domain-containing protein ZFN-like 6
STRINGGRMZM2G006493_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-59C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]