PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006477_P02
Common NameLOC100382084
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 287aa    MW: 31175.1 Da    PI: 6.5025
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006477_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31231281151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        k+r+rWtpeLHe+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQ
  GRMZM2G006477_P02 231 KQRMRWTPELHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQ 281
                        79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.332228287IPR017930Myb domain
SuperFamilySSF466894.3E-16229284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-29230281IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23231282IPR006447Myb domain, plants
PfamPF002499.8E-9233281IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRNFNLMQSQ KSRVLGAMSS SLPILPNPLK GSFSRPHNPQ HIPMLRQLPD DSMPLCIDTH  60
QSASLHPRAG VIGVPYSGYT ASPLDSVSNL DSQTMAAPFI SQSSNFEALQ SLSNNTPETH  120
TKAAWFTSSM DVSPLNTDNI AASDVNQIQS IRPAMTSDES ATQNDWWADI MNDDWKDILD  180
ATATDSHSKA MIQISNSATS LPAVNQSASS HSREICPVAS PPNSSNASVA KQRMRWTPEL  240
HECFVDAVNQ LGGSEKATPK GVLKLMKVDG LTIYHVKSHL QVCCLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-26231281151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-26231281151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-26231281151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-26231281151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-26230281152Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.235160.0endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006477
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006477_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0631020.0BT063102.1 Zea mays full-length cDNA clone ZM_BFc0026F11 mRNA, complete cds.
GenBankKJ7268320.0KJ726832.1 Zea mays clone pUT3372 G2-like transcription factor (GLK17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168318.10.0uncharacterized protein LOC100382084
RefseqXP_008643769.10.0putative MYB DNA-binding domain superfamily protein isoform X1
RefseqXP_008643772.10.0putative MYB DNA-binding domain superfamily protein isoform X1
RefseqXP_020393478.10.0putative MYB DNA-binding domain superfamily protein isoform X1
RefseqXP_020393489.10.0putative MYB DNA-binding domain superfamily protein isoform X1
SwissprotB8ANX91e-102PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLC0P4830.0C0P483_MAIZE; G2-like transcription factor
STRINGGRMZM2G006477_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-29phosphate starvation response 1