PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006477_P01 | ||||||||
Common Name | GLK17, LOC100382084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 450aa MW: 49645.6 Da PI: 6.592 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 110.5 | 8.1e-35 | 231 | 285 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ GRMZM2G006477_P01 231 KQRMRWTPELHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 285 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.969 | 228 | 288 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-18 | 229 | 285 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-32 | 230 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-26 | 231 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-10 | 233 | 284 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-24 | 314 | 360 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MRNFNLMQSQ KSRVLGAMSS SLPILPNPLK GSFSRPHNPQ HIPMLRQLPD DSMPLCIDTH 60 QSASLHPRAG VIGVPYSGYT ASPLDSVSNL DSQTMAAPFI SQSSNFEALQ SLSNNTPETH 120 TKAAWFTSSM DVSPLNTDNI AASDVNQIQS IRPAMTSDES ATQNDWWADI MNDDWKDILD 180 ATATDSHSKA MIQISNSATS LPAVNQSASS HSREICPVAS PPNSSNASVA KQRMRWTPEL 240 HECFVDAVNQ LGGSEKATPK GVLKLMKVDG LTIYHVKSHL QKYRTARYKP DLSEGTSEKR 300 TATEELVLDL KTSMDLTEAL RLQMEVQKRL HEQLEIQRKL QLRIEEQGKY LQMMFEKQSQ 360 SSTEKVQDPS SRDTTAKPSS NQSQSTNKDC GATMDPNGTG GIVRTAELGE RSSELGVKQK 420 LVEIEESGTE VATGDRSKIS QEKRRKLQDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-30 | 230 | 289 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23516 | 0.0 | endosperm| meristem| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006477 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006477_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063102 | 0.0 | BT063102.1 Zea mays full-length cDNA clone ZM_BFc0026F11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168318.1 | 0.0 | uncharacterized protein LOC100382084 | ||||
Refseq | XP_008643769.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_008643772.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020393478.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020393489.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
Swissprot | B8ANX9 | 1e-173 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | C0P483 | 0.0 | C0P483_MAIZE; G2-like transcription factor | ||||
STRING | GRMZM2G006477_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-70 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006477_P01 |
Entrez Gene | 100382084 |