PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006352_P01
Common NameLOC103636189, ZEAMMB73_305583, Zm.13882
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 326aa    MW: 35067.3 Da    PI: 6.7692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006352_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd+ll  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  GRMZM2G006352_P01 14 RGPWSPEEDDLLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding34.54.8e-1171111446
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         T++Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
  GRMZM2G006352_P01  71 YTEQEDRIICSLYNCIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                        69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.611966IPR017930Myb domain
SuperFamilySSF466891.47E-2711109IPR009057Homeodomain-like
SMARTSM007173.6E-121364IPR001005SANT/Myb domain
PfamPF002492.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241569IPR009057Homeodomain-like
CDDcd001675.12E-91662No hitNo description
SMARTSM007173.9E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129413.52667117IPR017930Myb domain
PfamPF002498.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2170116IPR009057Homeodomain-like
CDDcd001677.75E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKT SVKRGPWSPE EDDLLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SLYNCIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAVAM  120
QEQQKEKEEE EEYYQQQQQH TSGGRGAAPR SQQCASMQPS PASASSAVTT ASPSDACSFG  180
AMYPSPTTLQ APVHARYDVT APVPPVPQQQ ASSSSLAEFS PAPAPAPAAT PPAASIIGGT  240
CTWAGGPLLD DMFLPELLGD VSEFPPGDFF GTGGLAPLLQ DRAAAASLQE LSAFYFPNAQ  300
AEMWAAADHH VHANNKPAAG LCHSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006352
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006352_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794310.0HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656763.10.0transcription factor MYB4
TrEMBLA0A3L6DQX90.0A0A3L6DQX9_MAIZE; Transcription factor RAX3
TrEMBLK7V0P70.0K7V0P7_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G006352_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-68myb domain protein 84