PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G006282_P01 | ||||||||
Common Name | LOC103628259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 18660.9 Da PI: 7.774 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GRMZM2G006282_P01 29 YPCSFCRREFRSAQALGGHMNVH 51 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.1E-6 | 26 | 56 | No hit | No description |
Pfam | PF13912 | 5.6E-6 | 29 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.074 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MDERESRKKQ QLSSWMSSCG FTAWPPRSYP CSFCRREFRS AQALGGHMNV HRRDRARLTH 60 GSPPPPPPPP PPSRAPPAMI PNLNYPPPSS SSSTNKKLLD APSSIEMELE LELGVGVACS 120 SDCNTAGAAT CCTTTSTTPA AAGGGPEDDR ALDLELRLGS VSSPSFHHTR AYDP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 24 | 51 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 24 | 51 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G006282 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G006282_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646713.1 | 1e-124 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A1D6GXQ3 | 1e-123 | A0A1D6GXQ3_MAIZE; Transcriptional regulator SUPERMAN | ||||
STRING | GRMZM2G006282_P01 | 1e-123 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G006282_P01 |
Entrez Gene | 103628259 |