PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006042_P03
Common NameLOC100383196, ZEAMMB73_567315
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 826aa    MW: 91139.3 Da    PI: 7.4877
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006042_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-24147248199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  GRMZM2G006042_P03 147 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 236
                        99*****************************555555669************************************************..44 PP

                        SEE..EEEEE-S CS
                 B3  88 sefelvvkvfrk 99 
                        +++el+v+v+r+
  GRMZM2G006042_P03 237 ENGELRVGVRRA 248
                        9999*****985 PP
2Auxin_resp110.22.1e-36273355183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+s+F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRf+m+fe+e+++e+r++Gt+vg+  +dp+ W +SkWrsLk
  GRMZM2G006042_P03 273 AWHAVNTGSMFTVYYKPRTSPAEFVVSRARYCESLKRNYSIGMRFRMRFEGEEAAEQRFTGTIVGICVSDPSGWADSKWRSLK 355
                        89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-41144276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-21145247No hitNo description
Gene3DG3DSA:2.40.330.102.5E-40145262IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-23147249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73147249IPR003340B3 DNA binding domain
PfamPF023621.1E-21147248IPR003340B3 DNA binding domain
PfamPF065075.9E-33273355IPR010525Auxin response factor
PROSITE profilePS5174523.482679763IPR000270PB1 domain
SuperFamilySSF542774.71E-11682755No hitNo description
PfamPF023091.7E-6726763IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MVAAAAAAGG GADAGCGGGG GGGGKDALFV ELWKACAGPL SSVPLLGEKV YYFPQGHIEQ  60
VEASTNHLAE HQGTPLYNLP WKIPCKLMNM ELKAEPDTDE VYAQLTLLPD KKQDENTSAR  120
VENEEAEEEV VPHVPPATSE GLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ  180
HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTVYYKPR TSPAEFVVSR  300
ARYCESLKRN YSIGMRFRMR FEGEEAAEQR FTGTIVGICV SDPSGWADSK WRSLKVRWDE  360
ASSVPRPERV SPWQIEPAVS PSPVNPLPVR FKRSRSSVNA SPSDVSTVNR EVASKVMVES  420
QQNNLPRALH NQGRTQLTGR YRDSTDVKTA QDLTMWSSGT EQQRNNIAAQ TKRCLEGWTQ  480
SRTPEGYNQL FSAFQPLKDA HNPLRPFPNK ISGTRSSTWV TADARYPAQQ ANHNMLHGTL  540
SFMPHSSGFR MIQQNNLVTP EAANFTGKSA FTSLQGHVTD QCSTGWFGSI ESNSHTDHAS  600
SSLIRSQPLV IGNDVQKTKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPTDNNE  660
PCSEATQNIQ NKVQSSSTRS CKKVHKQGSA LGRSIDLTKF ACYDELIAEL DQMFDFDGEL  720
KSPCRNWLVV YTDNEGDMML VGDDPWNEFC DMVHKIFIYT REEVERMNPG ALNARLEDCL  780
SDSLGRGLAS KEPRSGPSTS AVDSENRANL STLLKVVKQT KGHVSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-167113772354Auxin response factor 1
4ldw_A1e-167113772354Auxin response factor 1
4ldw_B1e-167113772354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.234210.0aerial organ| ear| embryo| endosperm| leaf| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006042
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006042_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665440.0BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds.
GenBankJX4285050.0JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds.
GenBankKJ7268060.0KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662180.10.0hypothetical protein
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLK7TJD30.0K7TJD3_MAIZE; Auxin response factor
STRINGGRMZM2G006042_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]