PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G006042_P01 | ||||||||
Common Name | ARF28, LOC100383196, ZEAMMB73_567315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 813aa MW: 89705.5 Da PI: 7.2453 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 6.9e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + GRMZM2G006042_P01 147 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 236 99*****************************555555669************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ GRMZM2G006042_P01 237 ENGELRVGVRRA 248 9999*****985 PP | |||||||
2 | Auxin_resp | 110.3 | 2e-36 | 273 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRf+m+fe+e+++e+r++Gt+vg+ +dp+ W +SkWrsLk GRMZM2G006042_P01 273 AWHAVNTGSMFTVYYKPRTSPAEFVVSRARYCESLKRNYSIGMRFRMRFEGEEAAEQRFTGTIVGICVSDPSGWADSKWRSLK 355 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.02E-41 | 144 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-21 | 145 | 247 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 145 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-21 | 147 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.8E-33 | 273 | 355 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.482 | 679 | 763 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.61E-11 | 682 | 755 | No hit | No description |
Pfam | PF02309 | 1.6E-6 | 726 | 763 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MVAAAAAAGG GADAGCGGGG GGGGKDALFV ELWKACAGPL SSVPLLGEKV YYFPQGHIEQ 60 VEASTNHLAE HQGTPLYNLP WKIPCKLMNM ELKAEPDTDE VYAQLTLLPD KKQDENTSAR 120 VENEEAEEEV VPHVPPATSE GLRIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ 180 HPPNQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE 240 LRVGVRRALR HQTTIPSSVI SSHSMHLGVL ATAWHAVNTG SMFTVYYKPR TSPAEFVVSR 300 ARYCESLKRN YSIGMRFRMR FEGEEAAEQR FTGTIVGICV SDPSGWADSK WRSLKVRWDE 360 ASSVPRPERV SPWQIEPAVS PSPVNPLPVR FKRSRSSVNA SPSDVSTVNR EVASKVMVES 420 QQNNLPRALH NQGRTQLTGR YRDSTDVKTA QDLTMWSSGT EQQRNNIAAQ TKRCLEGWTQ 480 SRTPEGYNQL FSAFQPLKDA HNPLRPFPNK ISGTRSSTWV TADARYPAQQ ANHNMLHGTL 540 SFMPHSSGFR MIQQNNLVTP EAANFTGKSA FTSLQGHVTD QCSTGWFGSI ESNSHTDHAS 600 SSLIRSQPLV IGNDVQKTKG TSFKLFGIPL GSPEKSEPLV SPPSVAYDGK LQTSPTDNNE 660 PCSEATQNIQ NKVQSSSTRS CKKVHKQGSA LGRSIDLTKF ACYDELIAEL DQMFDFDGEL 720 KSPCRNWLVV YTDNEGDMML VGDDPWNEFC DMVHKIFIYT REEVERMNPG ALNARLEDCL 780 SDSLGRGLAS KEPRSGPSTS AVDSENRANL SSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-168 | 11 | 377 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-168 | 11 | 377 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-168 | 11 | 377 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23421 | 0.0 | aerial organ| ear| embryo| endosperm| leaf| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G006042 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G006042_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066544 | 0.0 | BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169329.1 | 0.0 | uncharacterized protein LOC100383196 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | C0PE25 | 0.0 | C0PE25_MAIZE; Auxin response factor | ||||
TrEMBL | K0DFB6 | 0.0 | K0DFB6_MAIZE; Auxin response factor (Fragment) | ||||
STRING | GRMZM2G006042_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G006042_P01 |
Entrez Gene | 100383196 |
Publications ? help Back to Top | |||
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