PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005815_P02
Common NameLOC100277492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 210aa    MW: 23098.9 Da    PI: 10.2111
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005815_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind704.9e-22140201261
                        HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                        F+ k+ye+++d++++ ++sw     gn+fvv+d++ +a+ +Lp++Fkh nfaSFvRQLn+Y 
  GRMZM2G005815_P02 140 FVAKTYEMVSDAATDAVVSWApcGAGNTFVVWDPQALATGILPRFFKHANFASFVRQLNVYV 201
                        9********************55556***********************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-22134202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-13136209IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-18137202IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-13140163IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-18140201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-13180192IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-13193205IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLHRRCLQGT TYKKKLQTVL FFFPKNFYNF RSIMALVVCS CLYKMPKPRT PSPRPPHRIA  60
TGPPRSQMAS SSSCPLAPGT SGCKPRTTRT SGVGFGVEAM ARSVAAVKLE PKPEPWAAEA  120
EEGSSVVPRS MEGPPFPAPF VAKTYEMVSD AATDAVVSWA PCGAGNTFVV WDPQALATGI  180
LPRFFKHANF ASFVRQLNVY VWLLETLLNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-151312001178Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.301980.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005815
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005815_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695720.0BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds.
GenBankHQ8587240.0HQ858724.1 Zea mays clone UT1392 HSF transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351050.11e-89uncharacterized LOC100277492 isoform 1
TrEMBLF1DJW61e-132F1DJW6_MAIZE; HSF transcription factor (Fragment)
STRINGGRMZM2G005815_P011e-144(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-24heat shock transcription factor A2