PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G005815_P01 | ||||||||
Common Name | LOC100277492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 462aa MW: 50970.7 Da PI: 8.7669 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.7 | 1.5e-32 | 140 | 234 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F+ k+ye+++d++++ ++sw gn+fvv+d++ +a+ +Lp++Fkh nfaSFvRQLn+YgF+kv+ ++ weF+++sF +g+k GRMZM2G005815_P01 140 FVAKTYEMVSDAATDAVVSWApcGAGNTFVVWDPQALATGILPRFFKHANFASFVRQLNVYGFRKVNPDR---------WEFANESFLAGQK 222 9********************55556*****************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r++ + GRMZM2G005815_P01 223 HLLKSIRRRRAS 234 ********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.2E-49 | 136 | 231 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.36E-29 | 137 | 231 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.9E-33 | 138 | 231 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.3E-28 | 140 | 231 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-17 | 140 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-17 | 180 | 192 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 181 | 205 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-17 | 193 | 205 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MLHRRCLQGT TYKKKLQTVL FFFPKNFYNF RSIMALVVCS CLYKMPKPRT PSPRPPHRIA 60 TGPPRSQMAS SSSCPLAPGT SGCKPRTTRT SGVGFGVEAM ARSVAAVKLE PKPEPWAAEA 120 EEGSSVVPRS MEGPPFPAPF VAKTYEMVSD AATDAVVSWA PCGAGNTFVV WDPQALATGI 180 LPRFFKHANF ASFVRQLNVY GFRKVNPDRW EFANESFLAG QKHLLKSIRR RRASKPQVEA 240 SPRNSASACS GQPNKDPGVV ESLKRDRAAL RAEVITLRQQ YSICKSQLVA LEERILNNER 300 DQQKAIAFFA KVLSNPAFVQ QVLRNYARER ELHGASKRQR LMENEGHRQG DLPLRGSTEA 360 AFATGAAGVS VGTGSTNVGT AARQEESGSE LNDQEVNSIW SDVWDELDLD LDAVPGAEMD 420 RREADKGVAG FHDVEDLSGR PCGWGDEFSY LAEPMQFVEH YD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-23 | 131 | 234 | 11 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.30198 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G005815 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G005815_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069572 | 0.0 | BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001351050.1 | 0.0 | uncharacterized LOC100277492 isoform 1 | ||||
Swissprot | Q657C0 | 1e-134 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | F1DJW6 | 0.0 | F1DJW6_MAIZE; HSF transcription factor (Fragment) | ||||
STRING | GRMZM2G005815_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP14328 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 3e-68 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G005815_P01 |
Publications ? help Back to Top | |||
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