PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005301_P01
Common NameEREB144, Zm.127277
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 254aa    MW: 26432.5 Da    PI: 4.7323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005301_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1853100152
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                        s y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  GRMZM2G005301_P01  53 SSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 100
                        67*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1253100IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2153112IPR016177DNA-binding domain
CDDcd000181.42E-1953112No hitNo description
SMARTSM003803.0E-3454117IPR001471AP2/ERF domain
PROSITE profilePS5103223.03754111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3154113IPR001471AP2/ERF domain
PRINTSPR003673.5E-105566IPR001471AP2/ERF domain
PRINTSPR003673.5E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPEGDQVSSS SSRSSQASSG GTSSSPPWSP AGKKAGAAEK RARARETTTD PPSSYRGVRM  60
RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PDMAAALPRP  120
ASASPRDVQA AAARAAAMEM EPAAALHEPP DGPADEAAAL QMQPAAAAPP AGGQQQDEEL  180
EAIVELPRLD EDCAVATLGA TPCLSSSFHD VLAPAPWWVD DAAGYVAAAH DVDLFGLDGD  240
HGWAQSVGAL LWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16541111472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005301
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005301_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269400.0KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645615.11e-179ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A060CVD81e-178A0A060CVD8_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G005301_P011e-179(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]