PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005284_P01
Common NameLOC103641851, ZEAMMB73_937745, Zm.32896
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 588aa    MW: 63905.5 Da    PI: 8.7738
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005284_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.1e-20140239399
                        EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+lt+sd+ + g l++ +++ae++     +++k+ ++ ++ +d +g +W++++ yr++++r +lt+GW++Fv+++++  gD+vvF   ++++
  GRMZM2G005284_P01 140 KTLTKSDSYSGGSLSVRRTCAETIfpkldKSIKRPQQLVSARDVHGVEWTFRHVYRGTPERNLLTTGWSDFVNSKKIVIGDSVVFL--REED 229
                        89************************999666677789************************************************..5699 PP

                        E..EEEEE-S CS
                 B3  90 felvvkvfrk 99 
                        ++ +++++r+
  GRMZM2G005284_P01 230 GTIHIGLRRA 239
                        999***9997 PP
2Auxin_resp90.62.8e-30277360183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a++ a+ +++Fevv++Pra+++ F+v+v+ v +al+v++++G Rfkmafe +d s++++ +Gtv+gv  +dp rWp S+Wr L+
  GRMZM2G005284_P01 277 AVTLAAAGNPFEVVHYPRATAPAFCVRVATVIEALQVSWCPGLRFKMAFEAKDLSRISWfMGTVAGVGPADPARWPLSPWRFLQ 360
                        6788999**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-30132242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-23137240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617138240IPR003340B3 DNA binding domain
SMARTSM010198.3E-18138240IPR003340B3 DNA binding domain
PfamPF023621.5E-18140239IPR003340B3 DNA binding domain
CDDcd100174.15E-17140238No hitNo description
PfamPF065073.0E-27277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSPEACELTL APRMPASQAG AGAGAEPETK GSVHPQLWYA CAGPTCTVPP VGTAVYYFPQ  60
GHAEHAGAAA DANLHAPPFV PCRVAGVRFM AELDTDEIFV KIRLDPLRSG EPLTDVGEAQ  120
VVNDEAGQRQ PTRPVISSAK TLTKSDSYSG GSLSVRRTCA ETIFPKLDKS IKRPQQLVSA  180
RDVHGVEWTF RHVYRGTPER NLLTTGWSDF VNSKKIVIGD SVVFLREEDG TIHIGLRRAE  240
RASRRNAYGR QLVRGNASGT GAAADGVLRA EDVVAAAVTL AAAGNPFEVV HYPRATAPAF  300
CVRVATVIEA LQVSWCPGLR FKMAFEAKDL SRISWFMGTV AGVGPADPAR WPLSPWRFLQ  360
VTWDEPELVR NMNRLSPWQV ELVATMPNLP HFAAPPTPTP PRKKPRMPTY KEYQSQGRQL  420
FDPVFPLNNP LPLPHPHHHP APTHDWNCHG FVHCSSFPFP DSIAPAAAAG IQGARHANFA  480
QFLFSDHLLS NLRRSLVLGG IRQYPGDHHA APAPRIPIPT DDVKTGSETP RSPSHATKKR  540
DGVKPPGIRL FGQEILTEEQ MKGSHDGKAT NNTSGRSGAP EFGLEPGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-693338151388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400406PRKKPRM
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005284
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005284_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663388.10.0auxin response factor 10
SwissprotQ6K2231e-165ARFH_ORYSJ; Auxin response factor 8
TrEMBLK7UKA60.0K7UKA6_MAIZE; Auxin response factor
STRINGGRMZM2G005284_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-108auxin response factor 10