PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G005155_P02 | ||||||||
Common Name | LOC100272346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28686.7 Da PI: 8.2264 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss GRMZM2G005155_P02 9 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 46.1 | 2.2e-16 | 82 | 154 | 15 | 87 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 qqe++++k+e + L+ +++ edL s s ++L +Leqq+e sl k+R +K+ell +q+ e ++e + GRMZM2G005155_P02 82 MDIQQEMTRMKDERNRLRMIMAQYMAEDLASFSAQDLSNLEQQIEFSLYKVRLRKQELLDQQLLEIHQREMHM 154 5689**************************************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.357 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-30 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.15E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-14 | 80 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.494 | 81 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP 60 PWRIASVFDR YLKAPSTRFE EMDIQQEMTR MKDERNRLRM IMAQYMAEDL ASFSAQDLSN 120 LEQQIEFSLY KVRLRKQELL DQQLLEIHQR EMHMPAEQGG YLCLMNPAAA IASGQHQQAG 180 EMVGINPRPF PWWDVGASGS GSGSQSQQQL LHGRDAAESS MTALGLSPQL HGYRLQPRQP 240 NLQQDADIHG WL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 8e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 8e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 8e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 9e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 9e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 9e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 9e-17 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12001 | 0.0 | meristem| pericarp| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G005155 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G005155_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038532 | 0.0 | BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds. | |||
GenBank | BT069133 | 0.0 | BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008667415.1 | 0.0 | MADS transcription factor isoform X2 | ||||
Swissprot | Q84NC2 | 2e-85 | MAD31_ORYSJ; MADS-box transcription factor 31 | ||||
TrEMBL | A0A1D6HRZ7 | 1e-177 | A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16 | ||||
TrEMBL | A0A3L6DPK5 | 1e-177 | A0A3L6DPK5_MAIZE; MADS-box transcription factor 31 | ||||
STRING | GRMZM2G135018_P01 | 1e-178 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-40 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G005155_P02 |
Entrez Gene | 100272346 |
Publications ? help Back to Top | |||
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