PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G005112_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 22493.4 Da PI: 5.5217 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 66 | 105 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eEd ++ a+ +G++ W+ Ia+ + Rt++ +k++w++ GRMZM2G005112_P01 66 QEEDCIIMIAHVVHGNK-WACIAKLLD-MRTDNAIKNHWNST 105 6899999999*******.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.891 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0033 | 60 | 108 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.04E-11 | 66 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-14 | 66 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-5 | 66 | 106 | No hit | No description |
Pfam | PF00249 | 5.7E-7 | 66 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAEEEQTQTE ALRQPQPYHL SAPPSGEDDD EATAFGAPVG GGAVAFAFTT ATTTNTTMEE 60 RALVAQEEDC IIMIAHVVHG NKWACIAKLL DMRTDNAIKN HWNSTLRRRY YNDGRCKHGG 120 SMERSIPKVS RAVSEAVLEE PWHLKDLSSF TAMDVRDAPV QIVPETFARA CHNIDQFLLL 180 KVLIHPTCPD QLQRLVLSDH TV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G005112 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G005112_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458769.1 | 1e-64 | transcription factor MYB1 | ||||
TrEMBL | A0A1D6N730 | 1e-150 | A0A1D6N730_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G005112_P01 | 1e-151 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-19 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G005112_P01 |